[gmx-users] MTTK with double precision GROMACS
khaos
spirit.khaos at gmail.com
Mon Dec 23 21:44:16 CET 2013
Dear all,
I'm trying to run the DPPC bilayer simulation using the double precision
GROMACS with the MTTK pressure coupling method.
However, I've got an error like this:
-------------------------------------------------------
Program mdrun_d, VERSION 4.6.5
Source code file:
/users/khaos/prog/src/gromacs-4.6.5/src/mdlib/iteratedconstraints.c, line:
226
Fatal error:
Could not converge NPT constraints
For more information and tips for troubleshooting, please check the GROMACS
website at http://www.gromacs.org/Documentation/Errors
-------------------------------------------------------
What can I do to solve this problem?
Additionally, as I know, the MTTK pressure coupling method only supports
isotropic scaling.
But I want to use the MTTK method with semi-isotropic scaling because my
system is membrane system.
Is there any trick for using the MTTK method with semi-isotropic scaling?
Here is the input parameters that I used.
=============================
integrator = md-vv
dt = 0.002
nsteps = 500000
nstlog = 100
nstxout = 500
nstenergy = 500
nstlist = 10
rlist = 1.2
coulombtype = pme
rcoulomb = 1.2
cutoff-scheme = group
vdw-type = switch
rvdw_switch = 1.0
rvdw = 1.2
tcoupl = nose-hoover
tc-grps = SYSTEM
tau-t = 0.1
nsttcouple = 1
ref-t = 323
pcoupl = MTTK
pcoupltype = isotropic
tau-p = 1.0
compressibility = 4.5e-5 0.0
ref-p = 1.0
constraints = all-bonds
constraint_algorithm = shake
=============================
Best,
Jumin
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