[gmx-users] Number of interactions per residue

Kavyashree M hmkvsri at gmail.com
Thu Feb 14 11:10:37 CET 2013


Thank you!

On Thu, Feb 14, 2013 at 3:38 PM, Erik Marklund <erikm at xray.bmc.uu.se> wrote:

> Perhaps g_hbond -contact will do what you want.
>
> Erik
>
>
> On Feb 14, 2013, at 10:42 AM, Kavyashree M wrote:
>
>  Dear users,
>>
>> How can I get the number of interactions of each residue
>> within a cut off as a function of time. just like g_saltbr writes
>> with the option -sep.
>> I tried using g_mdmat but it gives an average contact map.
>>
>> Thank you
>> Kavya
>> -- gmx-users mailing list    gmx-users at gromacs.org
>> http://lists.gromacs.org/**mailman/listinfo/gmx-users<http://lists.gromacs.org/mailman/listinfo/gmx-users>
>> * Please search the archive at http://www.gromacs.org/**
>> Support/Mailing_Lists/Search<http://www.gromacs.org/Support/Mailing_Lists/Search>before posting!
>> * Please don't post (un)subscribe requests to the list. Use the
>> www interface or send it to gmx-users-request at gromacs.org.
>> * Can't post? Read http://www.gromacs.org/**Support/Mailing_Lists<http://www.gromacs.org/Support/Mailing_Lists>
>>
>
> --
> gmx-users mailing list    gmx-users at gromacs.org
> http://lists.gromacs.org/**mailman/listinfo/gmx-users<http://lists.gromacs.org/mailman/listinfo/gmx-users>
> * Please search the archive at http://www.gromacs.org/**
> Support/Mailing_Lists/Search<http://www.gromacs.org/Support/Mailing_Lists/Search>before posting!
> * Please don't post (un)subscribe requests to the list. Use thewww
> interface or send it to gmx-users-request at gromacs.org.
> * Can't post? Read http://www.gromacs.org/**Support/Mailing_Lists<http://www.gromacs.org/Support/Mailing_Lists>
>



More information about the gromacs.org_gmx-users mailing list