[gmx-users] RMSF: protein flexibility

[Tsjerk Wassenaar]

Hi Vandna,

You indicate that it should be in the directory where you issue to
command. It's not there. Maybe you used a different name for your
runs? Or you are in the wrong directory?

Cheers,

Tsjerk


On Sat, Feb 23, 2013 at 11:18 AM, vandna sharma <vsharma at imtech.res.in> wrote:
> as i want to analyse the local protein mobility, i used
> g_rmsf -s md.tpr -f traj.xtc -oq
>
> but its showing can not open file md.tpr...can anyone please suggest me from
> where to get md.tpr file ???/
>
>
>
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-- 
Tsjerk A. Wassenaar, Ph.D.

post-doctoral researcher
Biocomputing Group
Department of Biological Sciences
2500 University Drive NW
Calgary, AB T2N 1N4
Canada