[gmx-users] Re: Simulation of 2D lattice model

Justin Lemkul jalemkul at vt.edu
Tue Jan 1 20:09:41 CET 2013

On 1/1/13 2:01 PM, James Starlight wrote:
> Have someone else any ideas how the topology for a simple 2D lattice
> could be done ?:)
> I've tried to build it manually but for the system of 48 nodes
> definition of the angles and impropers have appeared very routinely :(

For regularly spaced atoms, g_x2top should do it.



Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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