[gmx-users] multiple pdb of same protein complex

[Serdar Durdagi, PhD]

I would like to analyze the different conformations (~1000 structures) 
of a protein/protein complex using GROMACS. Can I list all of these pdb 
files within a text file when I start the pdb2gmx; i.e., text file that 
includes:
0001.pdb
0002.pdb
....

or is there any other ways to handle this problem?

many thanks,


Serdar