[gmx-users] multiple pdb of same protein complex

[Javier Cerezo]

You could use a script to do all runs consecutively using one pdb file 
at a time. Anyway, if what you have are different conformations of the 
same system, the same topology should apply for all of them, so just 
need to obtain it once.

Javier

El 16/01/13 12:07, Serdar Durdagi, PhD escribió:
> I would like to analyze the different conformations (~1000 structures) 
> of a protein/protein complex using GROMACS. Can I list all of these 
> pdb files within a text file when I start the pdb2gmx; i.e., text file 
> that includes:
> 0001.pdb
> 0002.pdb
> ....
>
> or is there any other ways to handle this problem?
>
> many thanks,
>
>
> Serdar
>

-- 
Javier CEREZO BASTIDA
Ph.D. Student
Physical Chemistry
Universidad de Murcia
30100, Murcia (SPAIN)
T: (0034)868887434