[gmx-users] About Lateral Diffusion of Lipids
scvsankar_agr at yahoo.com
Wed Jan 16 12:18:13 CET 2013
Dear Justin Thank you for your Previous reply
I am Following your Protein Lipid Tutorial When I do the msd analysis For protein in DPPC lipid-water Bilayer in lateral Z direction using P8 atoms as index Then I have Got the Following Output Is the Following My Out put is Reasonable or Not?
Used 101 restart points spaced 10 ps over 1000 ps
Fitting from 100 to 900 ps
D[ P8] 0.0544 (+/- 0.0057) 1e-5 cm^2/s
What Is Lateral Diffusion of Lipids ? Its Value for Membrane Protein (output ) indicates What ?
Is there is Limiting (upper, Lower ) Value For Every System ? How could I come to a conclusion That My Value of My Diffusion Coefficient is Reasonable or Not
Thanks In Advance
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