[gmx-users] Movements of secondary structure

[Justin Lemkul]

On 1/17/13 7:37 AM, 라지브간디 wrote:
> Dear all,
>
> I have been trying to calculate and plot the secondary structure of helix movements during the simulation on time through g_helix, g_helix orient, g_principle and g_mindist but none of them shown the helix movements.
>
> Is there any other tool can elaborate the helix movements ? Plz suggestion are appreciated.
>

You'll have to define what you mean by "helix movements."  Everything moves in a 
simulation, but what is it that you're trying to quantify?  If it's secondary 
structure itself, use do_dssp.  If you're after something else, you will have to 
be more specific.

-Justin

-- 
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Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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