[gmx-users] About Grid MAT

[vidhya sankar]

Dear  Justin Thank you for your Previous Reply Mail

              

                      I am using GridMAt MD Script When I run the APL Headgroup Calculation It runs well But  I Have got  Output With  the Following Comment in My Command Prompt 

looking for offending protein atoms...
There are 143 protein atoms within the headgroups of the top leaflet
There are 65 protein atoms within the headgroups of the bottom leaflet

To Avoid this Which Parameter Should I adjust Either precision   Parameter or  P_value     Parameter 


Thanks In Advance