[gmx-users] Problem with gromacs-4.6 compilation on Debian

[James Starlight]

Szilárd,

thanks for suggestion. Indeed I've noticed that versions of all
packages in classic debian are older in comparison to debian mint (
despite I've done maximum upgrade of the system via apt). Tomorrow
I'll try to install newest gcc and glibc and re-install gromacs.


James

2013/1/22 Szilárd Páll <szilard.pall at cbr.su.se>:
> On Tue, Jan 22, 2013 at 12:45 PM, James Starlight <jmsstarlight at gmail.com>wrote:
>
>> Szilárd,
>>
>> Today I've tried to re-install cuda+gromacs and do apt-get
>> distr-upgrade but the same error was obtained during gromacs
>>
>
> I'm don't see how does the distribution upgrade relate to the issues you
> had (except if you have updated glibs to a newer version which is *still*
> incompatible with libcuda. You should probably try getting a more recent
> glibc and GCC version, one that libcuda is linked against. However, I'm not
> sure what the source of your problem is, so I can't suggest a certain
> solution.
>
>> compilation. By the way where I could provide --add-needed option ?
>
> CMAKE_EXE_LINKER_FLAGS=-wl,--add-needed
>
> Cheers,
> Szilárd
>
>
>>
>>
>> James
>>
>>
>> 2013/1/21 Szilárd Páll <szilard.pall at cbr.su.se>:
>> > Szilárd
>> --
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