[gmx-users] Problem with gromacs-4.6 compilation on Debian

[Ricardo]

On 01/22/2013 06:02 PM, Christoph Junghans wrote:
>> Message: 5
>> Date: Tue, 22 Jan 2013 19:42:01 +0100
>> From: Szil?rd P?ll<szilard.pall at cbr.su.se>
>> Subject: Re: [gmx-users] Problem with gromacs-4.6 compilation on
>>          Debian
>> To: Discussion list for GROMACS users<gmx-users at gromacs.org>
>> Message-ID:
>>          <CANnYEw5=t=25hnZPfHpdJot7=3YNCU1AeGv7HCAc3mut_75w8Q at mail.gmail.com>
>> Content-Type: text/plain; charset=ISO-8859-1
>>
>> On Tue, Jan 22, 2013 at 12:45 PM, James Starlight<jmsstarlight at gmail.com>wrote:
>>
>>> Szilárd,
>>>
>>> Today I've tried to re-install cuda+gromacs and do apt-get
>>> distr-upgrade but the same error was obtained during gromacs
>>>
>> I'm don't see how does the distribution upgrade relate to the issues you
>> had (except if you have updated glibs to a newer version which is *still*
>> incompatible with libcuda. You should probably try getting a more recent
>> glibc and GCC version, one that libcuda is linked against. However, I'm not
>> sure what the source of your problem is, so I can't suggest a certain
>> solution.
> I had a similar problem on Gentoo Linux
> (https://bugs.gentoo.org/show_bug.cgi?id=452386), it helped to use a
> newer version of gcc (>=4.6).
>
> Cheers,
>
> Christoph



I also had this problem, and found that (manually) updating GCC to 
version 4.6 or higher has fully solved some installation issues with 
GROMACS 4.6. Please note that, for older linux dists, updating via 
console 'apt-get update' does not assure that you'd get newer versions 
of GCC, therefore, in this case, it should be downloaded and installed 
manually.

Cheers

>>> compilation. By the way where I could provide --add-needed option ?
>> CMAKE_EXE_LINKER_FLAGS=-wl,--add-needed
>>
>> Cheers,
>> Szilárd
>>
>>
>>>
>>> James
>>>
>>>
>>> 2013/1/21 Szilárd Páll<szilard.pall at cbr.su.se>:
>>>> Szilárd
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> --
> Christoph Junghans
> Web: http://www.compphys.de

Ricardo O S Soares
http://fisbio.fcfrp.usp.br/joomla/