[gmx-users] Problem with gromacs-4.6 compilation on Debian

[Christoph Junghans]

> Message: 5
> Date: Tue, 22 Jan 2013 19:42:01 +0100
> From: Szil?rd P?ll <szilard.pall at cbr.su.se>
> Subject: Re: [gmx-users] Problem with gromacs-4.6 compilation on
>         Debian
> To: Discussion list for GROMACS users <gmx-users at gromacs.org>
> Message-ID:
>         <CANnYEw5=t=25hnZPfHpdJot7=3YNCU1AeGv7HCAc3mut_75w8Q at mail.gmail.com>
> Content-Type: text/plain; charset=ISO-8859-1
>
> On Tue, Jan 22, 2013 at 12:45 PM, James Starlight <jmsstarlight at gmail.com>wrote:
>
>> Szilárd,
>>
>> Today I've tried to re-install cuda+gromacs and do apt-get
>> distr-upgrade but the same error was obtained during gromacs
>>
>
> I'm don't see how does the distribution upgrade relate to the issues you
> had (except if you have updated glibs to a newer version which is *still*
> incompatible with libcuda. You should probably try getting a more recent
> glibc and GCC version, one that libcuda is linked against. However, I'm not
> sure what the source of your problem is, so I can't suggest a certain
> solution.
I had a similar problem on Gentoo Linux
(https://bugs.gentoo.org/show_bug.cgi?id=452386), it helped to use a
newer version of gcc (>=4.6).

Cheers,

Christoph
>
>> compilation. By the way where I could provide --add-needed option ?
>
> CMAKE_EXE_LINKER_FLAGS=-wl,--add-needed
>
> Cheers,
> Szilárd
>
>
>>
>>
>> James
>>
>>
>> 2013/1/21 Szilárd Páll <szilard.pall at cbr.su.se>:
>> > Szilárd
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--
Christoph Junghans
Web: http://www.compphys.de