[gmx-users] g_hbond existence matrix

Kavyashree M hmkvsri at gmail.com
Thu Jan 24 17:03:55 CET 2013

Dear users,

I have a little confusion -
The hbmap.xpm file gives the existence of each hydrogen bond.
The file mentions -
"   c #FFFFFF " /* "None" */,
"o  c #FF0000 " /* "Present" */,
Meaning -
character "<space>" in white colour means Hbond not present
character "o" in red colour means Hbond is present.

In addition, the file also contains white coloured "o" what is

Thank you

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