[gmx-users] g_hbond existence matrix
jalemkul at vt.edu
Thu Jan 24 20:10:32 CET 2013
On 1/24/13 11:03 AM, Kavyashree M wrote:
> Dear users,
> I have a little confusion -
> The hbmap.xpm file gives the existence of each hydrogen bond.
> The file mentions -
> " c #FFFFFF " /* "None" */,
> "o c #FF0000 " /* "Present" */,
> Meaning -
> character "<space>" in white colour means Hbond not present
> character "o" in red colour means Hbond is present.
> In addition, the file also contains white coloured "o" what is
There are only two characters in the .xpm file, a space and an 'o' as you noted
above. The font color that appears in your terminal is whatever you have set it
to be; there is no significance of different colored letters in the .xpm file.
There either is a hydrogen bond in a frame (in which case you see 'o') or there
is not (and thus a blank space).
Justin A. Lemkul, Ph.D.
Department of Biochemistry
jalemkul[at]vt.edu | (540) 231-9080
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