[gmx-users] Decreasing of the box size during membrane protein simulation
jalemkul at vt.edu
Mon Jan 28 14:39:51 CET 2013
On 1/28/13 8:30 AM, James Starlight wrote:
> Below you can see graph representation of my system after energy
> minimisation ( that case system was filled up with tip3p water using
> genbox with slightly increased vdw for C atom ( to 2nm) to prevent
I'm assuming you mean 2 Angstrom?
> water movement into the membrane.
I can't exactly guess what the dimensions of the system are, but it seems to me
that the z-dimension is not 10 nm based on a rough guess of how many lipids are
Justin A. Lemkul, Ph.D.
Department of Biochemistry
jalemkul[at]vt.edu | (540) 231-9080
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