[gmx-users] Decreasing of the box size during membrane protein simulation
jmsstarlight at gmail.com
Mon Jan 28 14:45:30 CET 2013
yes, 2 A for C atoms.
The dims are 8.68740 8.41864 10.00000
2013/1/28 Justin Lemkul <jalemkul at vt.edu>:
> On 1/28/13 8:30 AM, James Starlight wrote:
>> Below you can see graph representation of my system after energy
>> minimisation ( that case system was filled up with tip3p water using
>> genbox with slightly increased vdw for C atom ( to 2nm) to prevent
> I'm assuming you mean 2 Angstrom?
>> water movement into the membrane.
> I can't exactly guess what the dimensions of the system are, but it seems to
> me that the z-dimension is not 10 nm based on a rough guess of how many
> lipids are present.
> Justin A. Lemkul, Ph.D.
> Research Scientist
> Department of Biochemistry
> Virginia Tech
> Blacksburg, VA
> jalemkul[at]vt.edu | (540) 231-9080
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