[gmx-users] pdb files from trajectory

[Tsjerk Wassenaar]

Hi Shima,

You need to give a reference structure with the -s option. Otherwise the
program assumes you mean to use topol.tpr, which isn't present.

Cheers,

Tsjerk


On Sun, Jul 7, 2013 at 11:51 AM, Shima Arasteh
<shima_arasteh2001 at yahoo.com>wrote:

> Dear gmx users,
>
> I' d like to get pdb files from trajectory, then used the trjconv,
>
>
> # trjconv -f trajout.xtc -o out.pdb -sep
>
>
> It gives fatal error as this:
> Can not open file:
> topol.tpr
>
>
>
>
>
> Sincerely,
> Shima
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-- 
Tsjerk A. Wassenaar, Ph.D.