[gmx-users] Problem creating the gro file with Amber

[Melchor S.]

Hi all,

I am trying to create the gromacs topology and gro file, using pdb2gmx, with
the Amber99SB-ILDN ff. The problem is that  my protein has two chains, but
the second one, is a one residue chain, that contains a GLU. 

When I try it I obtain:

Fatal error:
In the chosen force field there is no residue type for 'GLU' as a starting
terminus
For more information and tips for troubleshooting, please check the GROMACS
website at http://www.gromacs.org/Documentation/Errors

Some of you knows how to solve it?

Thanks in advance



--
View this message in context: http://gromacs.5086.x6.nabble.com/Problem-creating-the-gro-file-with-Amber-tp5009640.html
Sent from the GROMACS Users Forum mailing list archive at Nabble.com.