[gmx-users] frame

Johannes Wagner johannes.wagner at h-its.org
Mon Jun 3 15:45:10 CEST 2013


better to convert ur frames in a time (ps) and use trjconv -dump to write out the frame.


--
Dipl. Phys. Johannes Wagner
PhD Student, MBM Group

Klaus Tschira Lab (KTL)
Max Planck Partner Institut for Computational Biology (PICB)
320 YueYang Road
200031 Shanghai, China

phone: +86-21-54920475
email: Johannes at picb.ac.cn

and

Heidelberg Institut for Theoretical Studies
HITS gGmbH
Schloß-Wolfsbrunnenweg 35
69118 Heidelberg
Germany

phone: +49-6221-533254
fax: +49 6221 533298
email: johannes.wagner at h-its.org

http://www.h-its.org
_________________________________________________

Amtsgericht Mannheim / HRB 337446
Managing Directors:
Dr. h.c. Klaus Tschira
Prof. Dr.-Ing. Andreas Reuter

On 03.06.2013, at 15:33, maggin <maggin.chen at gmail.com> wrote:

> Hi, if I run 20ns MD, and want to get the pdb at 19532ps
> 
> trjconv -s  md_0_1.tpr -f md_0_1.xtc -o bovin19532.gro -dt 1 -b 19532  -e
> 19532
> 
> editconf -f bovin19532.gro -o bovin19532.pdb 
> 
> If is it right?
> 
> Thank you very much!
> 
> 
> 
> --
> View this message in context: http://gromacs.5086.x6.nabble.com/frame-tp5008727.html
> Sent from the GROMACS Users Forum mailing list archive at Nabble.com.
> -- 
> gmx-users mailing list    gmx-users at gromacs.org
> http://lists.gromacs.org/mailman/listinfo/gmx-users
> * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
> * Please don't post (un)subscribe requests to the list. Use the 
> www interface or send it to gmx-users-request at gromacs.org.
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists




More information about the gromacs.org_gmx-users mailing list