June 2013 Archives by subject
      
      Starting: Sat Jun  1 00:02:07 CEST 2013
         Ending: Sun Jun 30 18:11:13 CEST 2013
         Messages: 765
     
- [gmx-users] (no subject)
 
Marcelo Vanean
 - [gmx-users] (no subject)
 
Saeid Akbarshahi
 - [gmx-users] (no subject)
 
Hari Pandey
 - [gmx-users] (no subject)
 
Justin Lemkul
 - [gmx-users] ***using output of dl_poly in gromacs??***
 
hamid mosaddeghi
 - [gmx-users] ***using output of dl_poly in gromacs??***
 
David van der Spoel
 - [gmx-users] 1-4 interactions free energy calculations
 
Sonia Aguilera
 - [gmx-users] 1-4 interactions free energy calculations
 
Justin Lemkul
 - [gmx-users] Re: 1-4 interactions free energy calculations
 
Sonia Aguilera
 - [gmx-users] Re: 1-4 interactions free energy calculations
 
Michael Shirts
 - [gmx-users] Re: 1-4 interactions free energy calculations
 
Justin Lemkul
 - [gmx-users] Re: 1-4 interactions free energy calculations
 
Sonia Aguilera
 - [gmx-users] 2013 GROMACS USA Workshop and Conference
 
Michael Shirts
 - [gmx-users] 53A6 Heme bound Cys
 
Parker de Waal
 - [gmx-users] [ defaults ] and nonbonded
 
Steven Neumann
 - [gmx-users] [ defaults ] and nonbonded
 
Justin Lemkul
 - [gmx-users] [ defaults ] and nonbonded
 
Steven Neumann
 - [gmx-users] [ defaults ] and nonbonded
 
Mark Abraham
 - [gmx-users] [solved] Problem compiling Gromacs 4.6 on BlueGene/Q
 
Jernej Zidar
 - [gmx-users] A charge group moved too far between two domain	decomposition steps
 
Souilem Safa
 - [gmx-users] A charge group moved too far between two domain	decomposition steps
 
Justin Lemkul
 - [gmx-users] A charge group moved too far between two domain	decomposition steps
 
Dr. Vitaly Chaban
 - [gmx-users] A charge group moved too far between two domain	decomposition steps
 
Justin Lemkul
 - [gmx-users] A charge group moved too far between two domain	decomposition steps
 
Dr. Vitaly Chaban
 - [gmx-users] A charge group moved too far between two domain	decomposition steps
 
Justin Lemkul
 - [gmx-users] a snapshot of NVT
 
maggin
 - [gmx-users] a snapshot of NVT
 
Tsjerk Wassenaar
 - [gmx-users] a snapshot of NVT
 
maggin
 - [gmx-users] Re: a snapshot of NVT
 
maggin
 - [gmx-users] About  Concatenation of several trajectory files
 
vidhya sankar
 - [gmx-users] About  Concatenation of several trajectory files
 
Justin Lemkul
 - [gmx-users] About  coulmb & Vanderrwalls cutoff
 
vidhya sankar
 - [gmx-users] About  coulmb & Vanderrwalls cutoff
 
Justin Lemkul
 - [gmx-users] About Checkpoint error in gromacs 4.6
 
vidhya sankar
 - [gmx-users] About Checkpoint error in gromacs 4.6
 
Erik Marklund
 - [gmx-users] About Checkpoint error in gromacs 4.6
 
Justin Lemkul
 - [gmx-users] About Checkpoint error in gromacs 4.6
 
Mark Abraham
 - [gmx-users] About Checkpoint error in gromacs 4.6 
 
vidhya sankar
 - [gmx-users] About Checkpoint error in gromacs 4.6 
 
vidhya sankar
 - [gmx-users] About coulmb & Vanderrwalls cutoff
 
vidhya sankar
 - [gmx-users] About coulmb & Vanderrwalls cutoff
 
Justin Lemkul
 - [gmx-users] About coulmb & Vanderrwalls cutoff
 
Justin Lemkul
 - [gmx-users] About coulmb & Vanderrwalls cutoff 
 
vidhya sankar
 - [gmx-users] About low PH simulation of DPPC liposomes
 
cyberjhon
 - [gmx-users] About Physaica Parameter
 
vidhya sankar
 - [gmx-users] About Physaica Parameter
 
Justin Lemkul
 - [gmx-users] About Physical parameters
 
vidhya sankar
 - [gmx-users] About Physical parameters
 
Justin Lemkul
 - [gmx-users] RE: Re: RE: About the binary identical results by	restarting from the checkpoint file
 
Mark Abraham
 - [gmx-users] RE: About the binary identical results by restarting	from the checkpoint file
 
Mark Abraham
 - [gmx-users] RE: About the binary identical results by restarting	from the checkpoint file
 
Mark Abraham
 - [gmx-users] About the binary identical results by restarting from	the checkpoint file
 
Mark Abraham
 - [gmx-users] About the binary identical results by restarting from the checkpoint file
 
Cuiying Jian
 - [gmx-users] RE: About the binary identical results by restarting from the checkpoint file
 
Cuiying Jian
 - [gmx-users] RE: About the binary identical results by restarting from the checkpoint file
 
Cuiying Jian
 - [gmx-users] RE: About the binary identical results by restarting from the checkpoint file
 
Cuiying Jian
 - [gmx-users] RE: Re: RE: About the binary identical results by restarting from the checkpoint file
 
Cuiying Jian
 - [gmx-users] RE: Re: RE: Re: RE: About the binary identical results by restarting from the checkpoint file
 
Cuiying Jian
 - [gmx-users] AMBER to GROMACS conversion
 
Parker de Waal
 - [gmx-users] AMBER to GROMACS conversion
 
Mark Abraham
 - [gmx-users] AMBER to GROMACS conversion
 
Parker de Waal
 - [gmx-users] AMBER to GROMACS conversion
 
Bruce D. Ray
 - [gmx-users] Angles not read
 
Steven Neumann
 - [gmx-users] Angles not read
 
Justin Lemkul
 - [gmx-users] Angles not read
 
Steven Neumann
 - [gmx-users] Angles not read
 
Justin Lemkul
 - [gmx-users] Angles not read
 
Justin Lemkul
 - [gmx-users] Angles not read
 
Steven Neumann
 - [gmx-users] Angles not read
 
Justin Lemkul
 - [gmx-users] Angles not read
 
Steven Neumann
 - [gmx-users] Angles not read
 
Justin Lemkul
 - [gmx-users] Angles not read
 
Steven Neumann
 - [gmx-users] Angles not read
 
Justin Lemkul
 - [gmx-users] Angles not read
 
Steven Neumann
 - [gmx-users] Angles not read
 
Justin Lemkul
 - [gmx-users] Angles not read
 
Steven Neumann
 - [gmx-users] Angles not read
 
Steven Neumann
 - [gmx-users] Angles not read
 
Justin Lemkul
 - [gmx-users] ask for help
 
mxy1989 at mail.ustc.edu.cn
 - [gmx-users] assembling trajectory files
 
Souilem Safa
 - [gmx-users] assembling trajectory files
 
Justin Lemkul
 - [gmx-users] assembling trajectory files
 
Souilem Safa
 - [gmx-users] atomtype names case INsensitive?
 
gromacs query
 - [gmx-users] atomtype names case INsensitive?
 
Mark Abraham
 - [gmx-users] atomtype names case INsensitive?
 
Baptiste Demoulin
 - [gmx-users] atomtype names case INsensitive?
 
gromacs query
 - [gmx-users] autocorrelation output g_hbond
 
learnmd
 - [gmx-users] autocorrelation output g_hbond
 
Erik Marklund
 - [gmx-users] autocorrelation output g_hbond
 
Erik Marklund
 - [gmx-users] Binding free energy calculation by thermodynamic	integration
 
Moutusi Manna
 - [gmx-users] building OLPSAA force field
 
Souilem Safa
 - [gmx-users] building OLPSAA force field
 
Mark Abraham
 - [gmx-users] building OLPSAA force field
 
Souilem Safa
 - [gmx-users] can extract edr and cpt of one frame?
 
maggin
 - [gmx-users] can extract edr and cpt of one frame?
 
Mark Abraham
 - [gmx-users] Can we connect two boxes together for the simulation?
 
Bao Kai
 - [gmx-users] Can we connect two boxes together for the simulation?
 
Dr. Vitaly Chaban
 - [gmx-users] Can we connect two boxes together for the simulation?
 
Bao Kai
 - [gmx-users] Can we connect two boxes together for the simulation?
 
Justin Lemkul
 - [gmx-users] Can we connect two boxes together for the simulation?
 
Justin Lemkul
 - [gmx-users] Can we connect two boxes together for the simulation?
 
Dr. Vitaly Chaban
 - Aw: [gmx-users] Can't read 1048576 bytes of 'pullx500.xvg' to	compute checksum.
 
lloyd riggs
 - [gmx-users] Can't read 1048576 bytes of 'pullx500.xvg' to compute	checksum.
 
Steven Neumann
 - [gmx-users] Can't read 1048576 bytes of 'pullx500.xvg' to compute	checksum.
 
Steven Neumann
 - [gmx-users] Case sensitivity in atomtypes
 
Baptiste Demoulin
 - [gmx-users] Case sensitivity in atomtypes
 
Mark Abraham
 - [gmx-users] Case sensitivity in atomtypes
 
Alan
 - [gmx-users] Case sensitivity in atomtypes
 
Baptiste Demoulin
 - [gmx-users] cation-pi interaction
 
larif sofiene
 - [gmx-users] cation-pi interaction
 
Dr. Vitaly Chaban
 - [gmx-users] cation-pi interaction
 
Christopher Neale
 - [gmx-users] cation-pi interaction
 
Mark Abraham
 - [gmx-users] CG angle distribution
 
Steven Neumann
 - [gmx-users] CG angle distribution
 
Djurre de Jong-Bruinink
 - [gmx-users] cg Fatal error--DD cell
 
maggin
 - [gmx-users] Re: cg Fatal error--DD cell
 
maggin
 - [gmx-users] changing the version of file
 
Souilem Safa
 - [gmx-users] changing the version of file
 
Justin Lemkul
 - [gmx-users] changing the version of file
 
Souilem Safa
 - [gmx-users] charmm27 in gromacs- grompp error
 
Revthi Sanker
 - [gmx-users] charmm27 in gromacs- grompp error
 
Mark Abraham
 - [gmx-users] cholesteryl oleate parameters-reg
 
Revthi Sanker
 - [gmx-users] cholesteryl oleate parameters-reg
 
Justin Lemkul
 - [gmx-users] choosing box vectors
 
gromacs query
 - [gmx-users] choosing box vectors
 
Justin Lemkul
 - [gmx-users] choosing box vectors
 
gromacs query
 - [gmx-users] choosing box vectors
 
Justin Lemkul
 - [gmx-users] choosing box vectors
 
gromacs query
 - [gmx-users] choosing box vectors
 
Justin Lemkul
 - [gmx-users] choosing box vectors
 
gromacs query
 - [gmx-users] clarification of equation 4.65
 
Christopher Neale
 - [gmx-users] clarification of equation 4.65
 
Mark Abraham
 - [gmx-users] Compilation error
 
vidhya sankar
 - [gmx-users] Compilation error
 
Justin Lemkul
 - [gmx-users] Constraints of distance
 
Steven Neumann
 - [gmx-users] Constraints of distance
 
Justin Lemkul
 - [gmx-users] Constraints of distance
 
Dr. Vitaly Chaban
 - [gmx-users] Constraints of distance
 
Steven Neumann
 - [gmx-users] Constraints of distance
 
Dr. Vitaly Chaban
 - [gmx-users] Constraints of distance
 
Justin Lemkul
 - [gmx-users] Constraints of distance
 
Steven Neumann
 - [gmx-users] Constraints of distance
 
Justin Lemkul
 - [gmx-users] Creating a monolayer from Martini bilayer
 
Neha
 - [gmx-users] Creating a monolayer from Martini bilayer
 
Gunther Lukat
 - [gmx-users] Creating a monolayer from Martini bilayer
 
Tsjerk Wassenaar
 - [gmx-users] Creating a monolayer from Martini bilayer
 
Mirco Wahab
 - [gmx-users] Re: Creating a monolayer from Martini bilayer
 
Neha
 - [gmx-users] Re: Creating a monolayer from Martini bilayer
 
Tsjerk Wassenaar
 - [gmx-users] Re: Creating a monolayer from Martini bilayer
 
Neha
 - [gmx-users] Re: Creating a monolayer from Martini bilayer
 
Tsjerk Wassenaar
 - [gmx-users] Re: CUDA with QUADRO GPUs
 
Ramon Crehuet Simon
 - [gmx-users] CUDA with QUADRO GPUs?
 
Ramon Crehuet
 - [gmx-users] CUDA with QUADRO GPUs?
 
Szilárd Páll
 - [gmx-users] Dear Sir
 
Sathish Kumar
 - [gmx-users] Dear Sir
 
Justin Lemkul
 - [gmx-users] Decouple
 
Hari Pandey
 - [gmx-users] Decouple
 
Justin Lemkul
 - [gmx-users] Decouple
 
Justin Lemkul
 - [gmx-users] Default Electrostatic Algorithm for User Defined	Potential
 
Shi, Yu (shiy4)
 - [gmx-users] Details of umbrella sampling simulation
 
Kieu Thu Nguyen
 - [gmx-users] Re: Details of umbrella sampling simulation
 
JW Gibbs
 - [gmx-users] Re: Details of umbrella sampling simulation
 
Kieu Thu Nguyen
 - [gmx-users] Difference between the electrostatic treatments	PME/Cut-offs and Reaction Field
 
Dallas Warren
 - [gmx-users] Difference between the electrostatic treatments	PME/Cut-offs and Reaction Field
 
Michael Shirts
 - [gmx-users] diherdal psi vs angle teta plot
 
Steven Neumann
 - [gmx-users] diherdal psi vs angle teta plot
 
Justin Lemkul
 - [gmx-users] Distance travelled from time 0
 
Natalie Stephenson
 - [gmx-users] Distance travelled from time 0
 
Parker de Waal
 - [gmx-users] Distance travelled from time 0
 
Tsjerk Wassenaar
 - [gmx-users] Distance.dat file in umbrella sampling
 
Kieu Thu Nguyen
 - [gmx-users] Distance.dat file in umbrella sampling
 
Justin Lemkul
 - [gmx-users] distance_restraints
 
maggin
 - [gmx-users] distance_restraints
 
Justin Lemkul
 - [gmx-users] Re: distance_restraints
 
maggin
 - [gmx-users] Re: distance_restraints
 
Justin Lemkul
 - [gmx-users] Re: distance_restraints
 
maggin
 - [gmx-users] Re: distance_restraints
 
maggin
 - [gmx-users] Re: distance_restraints
 
Tsjerk Wassenaar
 - [gmx-users] Re: distance_restraints
 
maggin
 - [gmx-users] Re: distance_restraints
 
maggin
 - [gmx-users] Re: distance_restraints
 
Tsjerk Wassenaar
 - [gmx-users] Re: distance_restraints
 
maggin
 - [gmx-users] Domain Decomposition Error
 
Mark Abraham
 - [gmx-users] double sum over neighbor list
 
Sikandar Mashayak
 - [gmx-users] dssp works fine, but do_dssp gives fatal error
 
Nikunj Maheshwari
 - [gmx-users] dssp works fine, but do_dssp gives fatal error
 
Erik Marklund
 - [gmx-users] dssp works fine, but do_dssp gives fatal error
 
Nikunj Maheshwari
 - [gmx-users] dssp works fine, but do_dssp gives fatal error
 
Mark Abraham
 - [gmx-users] dssp works fine, but do_dssp gives fatal error
 
Nikunj Maheshwari
 - [gmx-users] dssp works fine, but do_dssp gives fatal error
 
Erik Marklund
 - [gmx-users] dssp works fine, but do_dssp gives fatal error
 
Nikunj Maheshwari
 - [gmx-users] dssp works fine, but do_dssp gives fatal error
 
Erik Marklund
 - [gmx-users] dssp works fine, but do_dssp gives fatal error
 
Nikunj Maheshwari
 - [gmx-users] Eigenvector and eigenvalues
 
Ankita naithani
 - [gmx-users] Eigenvector and eigenvalues
 
Tsjerk Wassenaar
 - [gmx-users] Eigenvector and eigenvalues
 
Tsjerk Wassenaar
 - [gmx-users] Eigenvector and eigenvalues
 
Ankita naithani
 - [gmx-users] Eigenvector and eigenvalues
 
Tsjerk Wassenaar
 - [gmx-users] eletrical filed issue
 
Tong Li
 - [gmx-users] EM problem
 
Kieu Thu Nguyen
 - [gmx-users] EM problem
 
Mark Abraham
 - [gmx-users] energ minimization: cg and I-bfgs
 
maggin
 - [gmx-users] Enthalpy Confusion
 
Jeffery Perkins
 - [gmx-users] Enthalpy Confusion
 
David van der Spoel
 - [gmx-users] Re: Enthalpy Confusion
 
Jeffery Perkins
 - [gmx-users] Re: Enthalpy Confusion
 
Michael Shirts
 - [gmx-users] Re: Enthalpy Confusion
 
Jeffery Perkins
 - [gmx-users] Re: Enthalpy Confusion
 
David van der Spoel
 - [gmx-users] Re: Enthalpy Confusion
 
Jeffery Perkins
 - [gmx-users] Re: Enthalpy Confusion
 
Michael Shirts
 - [gmx-users] Re: Enthalpy Confusion
 
Jeffery Perkins
 - Aw: [gmx-users] Enthalpy Confusion
 
lloyd riggs
 - [gmx-users] Re: Enthalpy Confusion
 
David van der Spoel
 - [gmx-users] Re: Enthalpy Confusion
 
Jeffery Perkins
 - [gmx-users] Re: Enthalpy Confusion
 
David van der Spoel
 - [gmx-users] Re: Enthalpy Confusion
 
Jeffery Perkins
 - [gmx-users] Re: Enthalpy Confusion
 
David van der Spoel
 - [gmx-users] equilibration error
 
Souilem Safa
 - [gmx-users] Error in grompp minimization
 
Souilem Safa
 - [gmx-users] Error in grompp minimization
 
Justin Lemkul
 - [gmx-users] Error in grompp minimization
 
Souilem Safa
 - [gmx-users] Error while using genion
 
Raji Viswanathan
 - [gmx-users] Error while using genion
 
Justin Lemkul
 - [gmx-users] Error while using genion
 
Justin Lemkul
 - [gmx-users] Re: Error while using genion
 
raji_yu
 - [gmx-users] Re: Error while using genion
 
Justin Lemkul
 - [gmx-users] Extending Simulations
 
Neha
 - [gmx-users] Extending Simulations
 
HANNIBAL LECTER
 - [gmx-users] Extending Simulations
 
Justin Lemkul
 - [gmx-users] Failed to lock: md.log.
 
Justin Lemkul
 - [gmx-users] Failed to lock: md.log. 
 
zhaowh
 - [gmx-users] Failed to lock: md.log. 
 
Jianguo Li
 - [gmx-users] fattyn acid parameter in OPLSAA forcefield
 
fatemeh ramezani
 - [gmx-users] fattyn acid parameter in OPLSAA forcefield
 
Mark Abraham
 - [gmx-users] fftw without SIMD
 
francesco oteri
 - [gmx-users] fftw without SIMD
 
Mark Abraham
 - [gmx-users] frame
 
maggin
 - [gmx-users] frame
 
Johannes Wagner
 - [gmx-users] Re: frame
 
maggin
 - [gmx-users] Re: frame
 
Mark Abraham
 - [gmx-users] Re: frame
 
Johannes Wagner
 - [gmx-users] Re: frame
 
maggin
 - [gmx-users] frame in VMD
 
maggin
 - [gmx-users] frame in VMD
 
Mark Abraham
 - [gmx-users] Re: Free Energy Calculations in Gromacs
 
JW Gibbs
 - [gmx-users] Re: Free Energy Calculations in Gromacs
 
Justin Lemkul
 - [gmx-users] Re: Free Energy Calculations in Gromacs
 
Michael Shirts
 - [gmx-users] Re: Free Energy Calculations in Gromacs
 
JW Gibbs
 - [gmx-users] Re: free energy calculations of methane in water	computed by GMX ver 4.5.7 and ver 4.6.2
 
Justin Lemkul
 - [gmx-users] free energy calculations of methane in water computed	by GMX ver 4.5.7 and ver 4.6.2
 
Justin Lemkul
 - [gmx-users] free energy calculations of methane in water computed by GMX ver 4.5.7 and ver 4.6.2
 
Dwey
 - [gmx-users] Re: free energy calculations of methane in water computed by GMX ver 4.5.7 and ver 4.6.2
 
Dwey
 - Fw: [gmx-users] ***using output of dl_poly in gromacs??***
 
hamid mosaddeghi
 - Fw: [gmx-users] ***using output of dl_poly in gromacs??***
 
David van der Spoel
 - Fw: Aw: [gmx-users] Enthalpy Confusion
 
lloyd riggs
 - [gmx-users] Fw: charmm27 in gromacs- grompp error
 
Revthi Sanker
 - [gmx-users] Fw: charmm27 in gromacs- grompp error
 
Justin Lemkul
 - Fwd: [gmx-users] Eigenvector and eigenvalues
 
Ankita naithani
 - [gmx-users] Fwd: Gromac trr analysis, wired interacation
 
Mark Abraham
 - Fwd: Re: [gmx-users] restraints on water oxygen atoms
 
Justin Lemkul
 - [gmx-users] g__dist calculate the distance of two residues from	different loops
 
aixintiankong
 - [gmx-users] g__dist calculate the distance of two residues from	different loops
 
Justin Lemkul
 - [gmx-users] g_correlation tool for gromacs-4.5.x
 
Navjeet Ahalawat
 - [gmx-users] g_density -center issues (GMX version 4.6)
 
Reid Van Lehn
 - [gmx-users] g_energy units
 
Leandro Bortot
 - [gmx-users] g_energy units
 
Mark Abraham
 - [gmx-users] g_mindist
 
Mahin Saberi
 - [gmx-users] g_mindist
 
Justin Lemkul
 - [gmx-users] g_sas on pdb files
 
erin.cutts
 - [gmx-users] g_sas on pdb files
 
Justin Lemkul
 - [gmx-users] Re: g_sas on pdb files
 
erin.cutts
 - [gmx-users] Re: g_sas on pdb files
 
Justin Lemkul
 - [gmx-users] Genbox center of box
 
Matt Bawn
 - [gmx-users] Genbox center of box
 
Justin Lemkul
 - [gmx-users] Re: Genbox center of box
 
Matt Bawn
 - [gmx-users] Re: Genbox center of box
 
Justin Lemkul
 - [gmx-users] Re: Genbox center of box
 
Matt Bawn
 - [gmx-users] Re: Genbox center of box
 
Justin Lemkul
 - [gmx-users] Re: Genbox center of box
 
Matt Bawn
 - [gmx-users] Getting .edr file data as a generic data file
 
Neha
 - [gmx-users] Getting .edr file data as a generic data file
 
Mark Abraham
 - [gmx-users] Re: gmx 4.6 mpi installation through openmpi?
 
escajarro
 - [gmx-users] Re: gmx 4.6 mpi installation through openmpi?
 
Mark Abraham
 - [gmx-users] Re: gmx 4.6 mpi installation through openmpi?
 
escajarro
 - [gmx-users] Re: gmx 4.6 mpi installation through openmpi?
 
Mark Abraham
 - [gmx-users] gmx 4.6.2 segementation fault (core dump)
 
Johannes Wagner
 - [gmx-users] gmx 4.6.2 segementation fault (core dump)
 
Szilárd Páll
 - [gmx-users] gmx 4.6.2 segementation fault (core dump)
 
Johannes Wagner
 - [gmx-users] gmx 4.6.2 segementation fault (core dump)
 
Szilárd Páll
 - [gmx-users] Re: gmx-users Digest, Vol 110, Issue 114
 
Raji Viswanathan
 - [gmx-users] GPU / CPU load imblance
 
Dwey
 - [gmx-users] GPU / CPU load imblance
 
Justin Lemkul
 - [gmx-users] GPU ECC question
 
Albert
 - [gmx-users] GPU ECC question
 
Szilárd Páll
 - [gmx-users] GPU problem
 
Albert
 - [gmx-users] GPU problem
 
Chandan Choudhury
 - [gmx-users] GPU problem
 
Albert
 - [gmx-users] GPU problem
 
Szilárd Páll
 - [gmx-users] GPU problem
 
lloyd riggs
 - [gmx-users] GPU problem
 
Justin Lemkul
 - Aw: Re: [gmx-users] GPU problem
 
lloyd riggs
 - [gmx-users] GPU-based workstation
 
James Starlight
 - [gmx-users] Re: greetings
 
Justin Lemkul
 - [gmx-users] Gromacs 4.5.4 and Gromacs 4.5.5 give different results
 
sarupria
 - [gmx-users] Gromacs 4.5.4 and Gromacs 4.5.5 give different results
 
Justin Lemkul
 - [gmx-users] Gromacs 4.5.4 and Gromacs 4.5.5 give different results
 
Sapna Sarupria
 - [gmx-users] Gromacs 4.5.4 and Gromacs 4.5.5 give different results
 
Justin Lemkul
 - [gmx-users] Gromacs 4.5.4 and Gromacs 4.5.5 give different results
 
Sapna Sarupria
 - [gmx-users] Gromacs 4.5.5
 
Emmanuel, Alaina
 - [gmx-users] Re: Gromacs 4.5.5
 
maggin
 - [gmx-users] Re: Gromacs 4.5.5
 
Mark Abraham
 - [gmx-users] Gromacs 4.5.5
 
Mark Abraham
 - [gmx-users] Re: Gromacs 4.5.5
 
Emmanuel, Alaina
 - [gmx-users] Gromacs 4.5.5
 
Emmanuel, Alaina
 - [gmx-users] Re: Gromacs 4.5.5
 
Emmanuel, Alaina
 - [gmx-users] gromacs 4.6.2 MPI distribution location problems
 
sirishkaushik
 - [gmx-users] Re: gromacs 4.6.2 MPI distribution location problems
 
sirishkaushik
 - [gmx-users] Re: gromacs 4.6.2 MPI distribution location problems
 
Mark Abraham
 - [gmx-users] Gromacs GPU system question
 
Mare Libero
 - [gmx-users] Gromacs GPU system question
 
Mirco Wahab
 - [gmx-users] Gromacs GPU system question
 
Mirco Wahab
 - [gmx-users] Gromacs GPU system question
 
Szilárd Páll
 - [gmx-users] Gromacs GPU system question
 
Szilárd Páll
 - [gmx-users] Gromacs GPU system question
 
Szilárd Páll
 - [gmx-users] GROMACS on GPU
 
sunyeping at aliyun.com
 - [gmx-users] gromacs on GPU
 
sunyeping at aliyun.com
 - [gmx-users] gromacs on GPU
 
Mark Abraham
 - [gmx-users] gromos force field in PRODRG server
 
shahab shariati
 - [gmx-users] gromos force field in PRODRG server
 
Justin Lemkul
 - [gmx-users] grompp error
 
Hasni Arsad
 - [gmx-users] grompp error
 
Mark Abraham
 - [gmx-users] grompp error
 
Mark Abraham
 - [gmx-users] grompp error
 
Hasni Arsad
 - [gmx-users] grompp error
 
massimo sandal
 - [gmx-users] grompp error
 
Hasni Arsad
 - [gmx-users] grompp error
 
Hasni Arsad
 - [gmx-users] Re: Have your ever got a real NVE simulation (good energy conservation) in gromacs?
 
cyberjhon
 - [gmx-users] Help with modified gmx_covar
 
rohitarora
 - [gmx-users] Help with modified gmx_covar
 
Mark Abraham
 - [gmx-users] High Initial generated Temp
 
tarak karmakar
 - [gmx-users] High Initial generated Temp
 
Justin Lemkul
 - [gmx-users] High Initial generated Temp
 
tarak karmakar
 - [gmx-users] High Initial generated Temp
 
tarak karmakar
 - [gmx-users] High Initial generated Temp
 
Justin Lemkul
 - [gmx-users] High Initial generated Temp
 
tarak karmakar
 - [gmx-users] High Initial generated Temp
 
Justin Lemkul
 - [gmx-users] High Initial generated Temp
 
tarak karmakar
 - [gmx-users] High Initial generated Temp
 
Mark Abraham
 - [gmx-users] how to add sodium acetate
 
maggin
 - [gmx-users] how to add sodium acetate
 
Justin Lemkul
 - [gmx-users] Re: how to add sodium acetate
 
maggin
 - [gmx-users] How to check if one protein broke into fragments	during MD?
 
Justin Lemkul
 - [gmx-users] Re: How to check if one protein broke into fragments	during MD?
 
maggin
 - [gmx-users] Re: How to check if one protein broke into fragments	during MD?
 
Justin Lemkul
 - [gmx-users] Re: How to check if one protein broke into fragments	during MD?
 
maggin
 - [gmx-users] How to check if one protein broke into fragments during	MD?
 
maggin
 - [gmx-users] How to compile/run Gromacs on native Infiniband?
 
Bert
 - [gmx-users] How to compile/run Gromacs on native Infiniband?
 
Szilárd Páll
 - [gmx-users] how to describe the  change of channel in the MD
 
aixintiankong
 - [gmx-users] how to describe the  change of channel in the MD
 
aixintiankong
 - [gmx-users] how to describe the  change of channel in the MD
 
Justin Lemkul
 - [gmx-users] how to describe the change of channel in the MD
 
francesco oteri
 - [gmx-users] How to modify the code g_hbond to analyze the	non-traditional hydrogen bonds like C-H...O
 
David van der Spoel
 - [gmx-users] How to modify the code g_hbond to analyze the non-traditional hydrogen bonds like C-H...O
 
Wu Chaofu
 - [gmx-users] InflateGRO methodology deletion radius
 
Shima Arasteh
 - [gmx-users] InflateGRO methodology deletion radius
 
Justin Lemkul
 - [gmx-users] InflateGRO methodology deletion radius
 
Shima Arasteh
 - [gmx-users] InflateGRO methodology deletion radius
 
Justin Lemkul
 - [gmx-users] InflateGRO methodology deletion radius
 
Shima Arasteh
 - [gmx-users] InflateGRO methodology deletion radius
 
Justin Lemkul
 - [gmx-users] Installation on Ubuntu 12.04LTS
 
Mare Libero
 - [gmx-users] Installation on Ubuntu 12.04LTS
 
Mark Abraham
 - [gmx-users] Installation on Ubuntu 12.04LTS
 
Szilárd Páll
 - [gmx-users] Installation on Ubuntu 12.04LTS
 
Mare Libero
 - [gmx-users] Intel vs gcc compilers
 
Djurre de Jong-Bruinink
 - [gmx-users] Intel vs gcc compilers
 
Mark Abraham
 - [gmx-users] Intel vs gcc compilers
 
Pedro Lacerda
 - [gmx-users] Intel vs gcc compilers
 
Mark Abraham
 - [gmx-users] Intel vs gcc compilers
 
Djurre de Jong-Bruinink
 - [gmx-users] Is non-linear data output/storage possible?
 
Neha
 - [gmx-users] Is non-linear data output/storage possible?
 
Dallas Warren
 - [gmx-users] Is non-linear data output/storage possible?
 
Mark Abraham
 - [gmx-users] Issues with energy when running in the microcanonical	ensemble
 
C.M.Sampson
 - [gmx-users] Issues with energy when running in the microcanonical	ensemble
 
Mark Abraham
 - [gmx-users] lipid parmaters
 
Revthi Sanker
 - [gmx-users] list of missing LJ-14 interactions:
 
라지브간디
 - [gmx-users] list of missing LJ-14 interactions:
 
Justin Lemkul
 - [gmx-users] maining helix conformation
 
Sanku M
 - [gmx-users] maining helix conformation
 
Justin Lemkul
 - [gmx-users] Re: MD run - gen_vel
 
Justin Lemkul
 - [gmx-users] mdrun segmentation fault for new build of gromacs	4.6.1
 
Roland Schulz
 - [gmx-users] Re: mdrun segmentation fault for new build of gromacs	4.6.1
 
Amil Anderson
 - [gmx-users] Re: mdrun segmentation fault for new build of gromacs	4.6.1
 
Roland Schulz
 - [gmx-users] Re: mdrun segmentation fault for new build of gromacs	4.6.1
 
Mark Abraham
 - [gmx-users] Re: mdrun segmentation fault for new build of gromacs	4.6.1
 
Roland Schulz
 - [gmx-users] Re: mdrun segmentation fault for new build of gromacs	4.6.1
 
Amil Anderson
 - [gmx-users] Re: mdrun segmentation fault for new build of gromacs	4.6.1
 
Roland Schulz
 - [gmx-users] Re: mdrun segmentation fault for new build of gromacs	4.6.1
 
Amil Anderson
 - [gmx-users] Re: mdrun segmentation fault for new build of gromacs	4.6.1
 
Szilárd Páll
 - [gmx-users] Re: mdrun segmentation fault for new build of gromacs	4.6.1
 
Mark Abraham
 - [gmx-users] Re: mdrun segmentation fault for new build of gromacs	4.6.1
 
Mark Abraham
 - [gmx-users] Re: mdrun segmentation fault for new build of gromacs	4.6.1
 
Amil Anderson
 - [gmx-users] Re: mdrun segmentation fault for new build of gromacs	4.6.1
 
Amil Anderson
 - [gmx-users] Re: mdrun segmentation fault for new build of gromacs	4.6.1
 
Szilárd Páll
 - [gmx-users] mdrun segmentation fault for new build of gromacs 4.6.1
 
Amil G. Anderson
 - [gmx-users] Membrane Equilibration
 
Neha
 - [gmx-users] Membrane Equilibration
 
Dr. Vitaly Chaban
 - [gmx-users] Membrane Equilibration
 
HANNIBAL LECTER
 - [gmx-users] Membrane Equilibration
 
Justin Lemkul
 - [gmx-users] Re: Membrane Equilibration
 
Neha
 - [gmx-users] Re: Membrane Equilibration
 
JW Gibbs
 - [gmx-users] Re: Membrane Equilibration
 
Justin Lemkul
 - [gmx-users] Re: Membrane Equilibration
 
JW Gibbs
 - [gmx-users] Re: Membrane Equilibration
 
Neha
 - [gmx-users] Re: Membrane Equilibration
 
Neha
 - [gmx-users] Membrane Runs Crashing
 
Neha
 - [gmx-users] Membrane Runs Crashing
 
Justin Lemkul
 - [gmx-users] Re: Membrane Runs Crashing
 
Neha
 - [gmx-users] Re: Membrane Runs Crashing
 
Justin Lemkul
 - [gmx-users] Re: Membrane Runs Crashing
 
Neha
 - [gmx-users] Re: Membrane Runs Crashing
 
Justin Lemkul
 - [gmx-users] Re: Membrane Runs Crashing
 
Mirco Wahab
 - [gmx-users] Re: Membrane Runs Crashing
 
Mirco Wahab
 - [gmx-users] Re: Membrane Runs Crashing
 
Neha
 - [gmx-users] Re: Membrane Runs Crashing
 
Neha
 - [gmx-users] Re: Membrane Runs Crashing
 
Justin Lemkul
 - [gmx-users] multiple chain restrain problem
 
Albert
 - [gmx-users] multiple chain restrain problem
 
Justin Lemkul
 - [gmx-users] multiple chain restrain problem
 
Albert
 - [gmx-users] ngmx not installed in gmx4.6.1
 
Chandan Choudhury
 - [gmx-users] ngmx not installed in gmx4.6.1
 
David van der Spoel
 - [gmx-users] ngmx not installed in gmx4.6.1
 
Mark Abraham
 - [gmx-users] ngmx not installed in gmx4.6.1
 
Dr. Vitaly Chaban
 - [gmx-users] ngmx not installed in gmx4.6.1
 
Chandan Choudhury
 - [gmx-users] No default Ryckaert-Bell. types
 
Nilesh Dhumal
 - [gmx-users] No default Ryckaert-Bell. types
 
Justin Lemkul
 - [gmx-users] No default Ryckaert-Bell. types
 
Nilesh Dhumal
 - [gmx-users] No default Ryckaert-Bell. types
 
Justin Lemkul
 - [gmx-users] Nonbonded parameters
 
Steven Neumann
 - [gmx-users] Nonbonded parameters
 
Justin Lemkul
 - [gmx-users] Nonbonded parameters
 
Steven Neumann
 - [gmx-users] Nonbonded parameters
 
Justin Lemkul
 - [gmx-users] Nonbonded parameters
 
Steven Neumann
 - [gmx-users] Nonbonded parameters
 
Steven Neumann
 - [gmx-users] Nonbonded parameters
 
Steven Neumann
 - [gmx-users] Nonbonded parameters
 
Mark Abraham
 - [gmx-users] Nonbonded parameters
 
Steven Neumann
 - [gmx-users] Nonbonded parameters
 
Mark Abraham
 - [gmx-users] Nonbonded parameters
 
Steven Neumann
 - [gmx-users] Nonbonded parameters
 
Steven Neumann
 - [gmx-users] Nonbonded parameters
 
Mark Abraham
 - [gmx-users] Nonbonded parameters
 
Steven Neumann
 - [gmx-users] Nonbonded parameters
 
Justin Lemkul
 - [gmx-users] Nonbonded parameters
 
Steven Neumann
 - [gmx-users] Nonbonded parameters
 
Justin Lemkul
 - [gmx-users] Re: Nose-Hover chains for membrane protein simulation
 
James Starlight
 - [gmx-users] Re: Nose-Hover chains for membrane protein simulation
 
Michael Shirts
 - [gmx-users] Re: Nose-Hover chains for membrane protein simulation
 
James Starlight
 - [gmx-users] Re: Nose-Hover chains for membrane protein simulation
 
Michael Shirts
 - Aw: [gmx-users] Nose-Hover chains for membrane protein simulation
 
lloyd riggs
 - [gmx-users] NVT .gro for NPT
 
maggin
 - [gmx-users] NVT .gro for NPT
 
Tsjerk Wassenaar
 - [gmx-users] Re: NVT .gro for NPT
 
maggin
 - [gmx-users] Re: NVT .gro for NPT
 
Mark Abraham
 - [gmx-users] nvt T coupling group problem
 
neshat haq
 - [gmx-users] nvt T coupling group problem
 
rajat desikan
 - [gmx-users] OPLS-AA to CHARMM conversion in gromacs	ffnonbonded.itp
 
Justin Lemkul
 - [gmx-users] OPLSAA.ff
 
Hari Pandey
 - [gmx-users] OPLSAA.ff
 
Broadbent, Richard
 - [gmx-users] OPLSAA.ff
 
Mark Abraham
 - [gmx-users] Overlap between PC motions
 
Miguel Ángel Mompeán García
 - [gmx-users] Re: oxidized lipid - Peroxidated lipid
 
dariush
 - [gmx-users] Re: oxidized lipid - Peroxidated lipid
 
Justin Lemkul
 - [gmx-users] PBC problem
 
Yutian  Yang
 - [gmx-users] PBC problem
 
Tsjerk Wassenaar
 - [gmx-users] pdb2gmx
 
Valentina Erastova
 - [gmx-users] Re: pdb2gmx
 
cyberjhon
 - [gmx-users] pdb2gmx
 
Justin Lemkul
 - [gmx-users] Performance of Gromacs-4.6.1 on BlueGene/Q
 
Jianguo Li
 - [gmx-users] Performance of Gromacs-4.6.1 on BlueGene/Q
 
XAvier Periole
 - [gmx-users] Performance of Gromacs-4.6.1 on BlueGene/Q
 
Mark Abraham
 - [gmx-users] Performance of Gromacs-4.6.1 on BlueGene/Q
 
Jianguo Li
 - [gmx-users] Performance of Gromacs-4.6.1 on BlueGene/Q
 
Jianguo Li
 - [gmx-users] Performance of Gromacs-4.6.1 on BlueGene/Q
 
Mark Abraham
 - [gmx-users] Performance of Gromacs-4.6.1 on BlueGene/Q
 
Mark Abraham
 - [gmx-users] Pressure coupling
 
Marcelo Vanean
 - [gmx-users] Pressure coupling
 
Mark Abraham
 - [gmx-users] Problem compiling Gromacs 4.6 on BlueGene/Q
 
Jernej Zidar
 - [gmx-users] Problem compiling Gromacs 4.6 on BlueGene/Q
 
Mark Abraham
 - [gmx-users] Problem in RMSD plot
 
Sainitin Donakonda
 - [gmx-users] Problem in RMSD plot
 
Justin Lemkul
 - [gmx-users] Problem of g_chi
 
spin
 - [gmx-users] problem using g_lie
 
khushboo bafna
 - [gmx-users] problem using g_lie
 
Justin Lemkul
 - [gmx-users] problem with charmm2gromacs-pvm.py
 
Albert
 - [gmx-users] Problems building gromacs 4.6
 
colinbannister
 - [gmx-users] Problems building gromacs 4.6
 
Mark Abraham
 - [gmx-users] Problems building gromacs 4.6
 
Colin Bannister
 - [gmx-users] Problems building gromacs 4.6
 
Mark Abraham
 - Aw: Re: [gmx-users] Re:Problems with extending runs
 
lloyd riggs
 - Aw: Re: [gmx-users] Re:Problems with extending runs
 
lloyd riggs
 - [gmx-users] problems with GROMACS 4.6.2
 
Mark Abraham
 - [gmx-users] problems with GROMACS 4.6.2
 
Szilárd Páll
 - [gmx-users] Problems with simulations of a triclinic crystal	lattice with Parrinello-Rahman
 
sa
 - [gmx-users] Projection of crystal structure on PCA plot
 
Anirban
 - [gmx-users] Projection of crystal structure on PCA plot
 
Tsjerk Wassenaar
 - [gmx-users] Projection of crystal structure on PCA plot
 
Anirban
 - [gmx-users] Projection of crystal structure on PCA plot
 
Tsjerk Wassenaar
 - [gmx-users] Projection of crystal structure on PCA plot
 
Anirban
 - [gmx-users] Protein RMSD high
 
tarak karmakar
 - [gmx-users] Protein RMSD high
 
Mark Abraham
 - [gmx-users] Protein RMSD high
 
tarak karmakar
 - [gmx-users] Pulling
 
Kieu Thu Nguyen
 - [gmx-users] Re: Pulling
 
Thomas Schlesier
 - [gmx-users] pullx file content with pull_geometry = position
 
Bastien Loubet
 - [gmx-users] Re: pullx file content with pull_geometry = position
 
Bastien Loubet
 - [gmx-users] Re: pullx file content with pull_geometry = position
 
Justin Lemkul
 - [gmx-users] Re: QM/MM simulations
 
DavidPO
 - [gmx-users] Re: QM/MM simulations
 
Justin Lemkul
 - [gmx-users] Re: QM/MM simulations
 
DavidPO
 - [gmx-users] Re: QM/MM simulations
 
Justin Lemkul
 - [gmx-users] Re: QM/MM simulations
 
Justin Lemkul
 - [gmx-users] Re: QM/MM simulations
 
DavidPO
 - [gmx-users] Re: QM/MM simulations
 
Justin Lemkul
 - [gmx-users] Quartic Angle
 
Steven Neumann
 - [gmx-users] Quartic Angle
 
Justin Lemkul
 - [gmx-users] Quartic Angle
 
Steven Neumann
 - [gmx-users] Quartic angle potential - how to use?
 
Steven Neumann
 - [gmx-users] Quartic angle potential - how to use?
 
Justin Lemkul
 - [gmx-users] Quartic angle potential - how to use?
 
Steven Neumann
 - [gmx-users] Quartic angle potential - how to use?
 
Justin Lemkul
 - [gmx-users] Quartic angle potential - how to use?
 
Steven Neumann
 - [gmx-users] Quartic angle potential - how to use?
 
Justin Lemkul
 - [gmx-users] Quartic angle potential - how to use?
 
Mark Abraham
 - [gmx-users] Quartic angle potential - how to use?
 
Steven Neumann
 - [gmx-users] Quartic angle potential - how to use?
 
Steven Neumann
 - [gmx-users] Quartic angle potential - how to use?
 
Mark Abraham
 - [gmx-users] Quartic angle potential - how to use?
 
Mark Abraham
 - [gmx-users] Quartic angle potential - how to use?
 
Steven Neumann
 - [gmx-users] Quartic angle potential - how to use?
 
Mark Abraham
 - [gmx-users] question about g_mindist
 
Mahin Saberi
 - [gmx-users] question regarding mutation from CH --> COH during	free energy calculation
 
Justin Lemkul
 - [gmx-users] question regarding mutation from CH --> COH during free energy calculation
 
Hyunjin Kim
 - [gmx-users] question regarding mutation from CH --> COH during free energy calculation
 
Hyunjin Kim
 - [gmx-users] radial distribution function gAB (r, theta)
 
neshat haq
 - [gmx-users] radial distribution function gAB (r, theta)
 
Justin Lemkul
 - [gmx-users] radial distribution function gAB (r, θ)
 
neshat haq
 - [gmx-users] refcoord_scaling = com
 
maggin
 - [gmx-users] refcoord_scaling = com
 
Justin Lemkul
 - [gmx-users] Re: refcoord_scaling = com
 
maggin
 - [gmx-users] Re: refcoord_scaling = com
 
Justin Lemkul
 - [gmx-users] Regarding mdrun
 
Venkat Reddy
 - [gmx-users] Regarding mdrun
 
Mark Abraham
 - [gmx-users] REMD
 
Shine A
 - [gmx-users] REMD
 
Mark Abraham
 - [gmx-users] remd analysis
 
Shine A
 - [gmx-users] remd analysis
 
Mark Abraham
 - [gmx-users] REMD run showing temperature range more than the	equilibrated.
 
suhani nagpal
 - [gmx-users] REMD run showing temperature range more than the	equilibrated.
 
Mark Abraham
 - [gmx-users] removal of the initial periodicity by editconf
 
Andrew Bostick
 - [gmx-users] removal of the initial periodicity by editconf
 
Andrew Bostick
 - [gmx-users] removal of the initial periodicity by editconf
 
Andrew Bostick
 - [gmx-users] removal of the initial periodicity by editconf
 
Justin Lemkul
 - [gmx-users] removal of the initial periodicity by editconf
 
Andrew Bostick
 - [gmx-users] removal of the initial periodicity by editconf
 
Justin Lemkul
 - [gmx-users] Removing Water from Final Simulation
 
Parker de Waal
 - [gmx-users] Removing Water from Final Simulation
 
Dallas Warren
 - [gmx-users] Removing Water from Final Simulation
 
Parker de Waal
 - [gmx-users] Removing Water from Final Simulation
 
Dallas Warren
 - [gmx-users] Removing Water from Final Simulation
 
Reid Van Lehn
 - [gmx-users] Removing Water from Final Simulation
 
Mark Abraham
 - [gmx-users] restraints on water oxygen atoms
 
Shima Arasteh
 - [gmx-users] restraints on water oxygen atoms
 
Justin Lemkul
 - [gmx-users] restraints on water oxygen atoms
 
Shima Arasteh
 - [gmx-users] restraints on water oxygen atoms
 
Justin Lemkul
 - [gmx-users] restraints on water oxygen atoms
 
Shima Arasteh
 - [gmx-users] restraints on water oxygen atoms
 
Justin Lemkul
 - [gmx-users] restraints on water oxygen atoms
 
Shima Arasteh
 - [gmx-users] restraints on water oxygen atoms
 
Justin Lemkul
 - [gmx-users] restraints on water oxygen atoms
 
Shima Arasteh
 - [gmx-users] restraints on water oxygen atoms
 
Justin Lemkul
 - [gmx-users] restraints on water oxygen atoms
 
Shima Arasteh
 - [gmx-users] Re: restraints on water oxygen atoms
 
JW Gibbs
 - [gmx-users] Re: restraints on water oxygen atoms
 
Justin Lemkul
 - [gmx-users] Running a Demo Calculation
 
Raji Viswanathan
 - [gmx-users] Running a Demo Calculation
 
Justin Lemkul
 - [gmx-users] Running gmx-4.6.x over multiple homogeneous nodes	with GPU acceleration
 
Mark Abraham
 - [gmx-users] Running gmx-4.6.x over multiple homogeneous nodes	with GPU acceleration
 
Szilárd Páll
 - [gmx-users] Running gmx-4.6.x over multiple homogeneous nodes	with GPU acceleration
 
João Henriques
 - [gmx-users] Running gmx-4.6.x over multiple homogeneous nodes	with GPU acceleration
 
João Henriques
 - [gmx-users] Running gmx-4.6.x over multiple homogeneous nodes	with GPU acceleration
 
Mark Abraham
 - [gmx-users] Running gmx-4.6.x over multiple homogeneous nodes	with GPU acceleration
 
João Henriques
 - [gmx-users] Running gmx-4.6.x over multiple homogeneous nodes	with GPU acceleration
 
João Henriques
 - [gmx-users] Running gmx-4.6.x over multiple homogeneous nodes	with GPU acceleration
 
Szilárd Páll
 - [gmx-users] Running gmx-4.6.x over multiple homogeneous nodes with	GPU acceleration
 
João Henriques
 - [gmx-users] Seeing Martini membrane trajectory files
 
Neha
 - [gmx-users] Seeing Martini membrane trajectory files
 
Justin Lemkul
 - [gmx-users] segemntation fault after run do_dssp
 
Nur Syafiqah Abdul Ghani
 - [gmx-users] segemntation fault after run do_dssp
 
Erik Marklund
 - [gmx-users] Re: segemntation fault after run do_dssp
 
shika
 - [gmx-users] segemntation fault after run do_dssp
 
Erik Marklund
 - [gmx-users] Segmentation fault (core dumped)
 
Ishwor Poudyal
 - [gmx-users] Segmentation fault (core dumped)
 
Justin Lemkul
 - [gmx-users] sequentially fitting each frame of one trajectory to	each frame of another trajectory
 
Tsjerk Wassenaar
 - [gmx-users] sequentially fitting each frame of one trajectory to	each frame of another trajectory
 
Thomas Evangelidis
 - [gmx-users] sequentially fitting each frame of one trajectory to each frame of another trajectory
 
Thomas Evangelidis
 - [gmx-users] Setting total simulation time
 
Parker de Waal
 - [gmx-users] Setting total simulation time
 
Mark Abraham
 - [gmx-users] Setting total simulation time
 
Parker de Waal
 - [gmx-users] Setting total simulation time
 
Justin Lemkul
 - [gmx-users] Settles vs. 3 normal constraints (energy	conservation problem)
 
Broadbent, Richard
 - [gmx-users] Re: Settles vs. 3 normal constraints (energy	conservation problem)
 
S. Alireza Bagherzadeh
 - [gmx-users] Settles vs. 3 normal constraints (energy conservation	problem)
 
S. Alireza Bagherzadeh
 - [gmx-users] Settles vs. 3 normal constraints (energy conservation	problem)
 
Mark Abraham
 - [gmx-users] Settles vs. 3 normal constraints (energy conservation	problem)
 
Mark Abraham
 - [gmx-users] shall we use double precision?
 
Albert
 - [gmx-users] shall we use double precision?
 
Mark Abraham
 - [gmx-users] shall we use double precision?
 
Albert
 - [gmx-users] shall we use double precision?
 
Dr. Vitaly Chaban
 - [gmx-users] site-site Coulombic force
 
biki
 - [gmx-users] site-site Coulombic force
 
Mark Abraham
 - [gmx-users] Snapshot and co-ordinate query
 
Ankita naithani
 - [gmx-users] Snapshot and co-ordinate query
 
Justin Lemkul
 - [gmx-users] Snapshot and co-ordinate query
 
Ankita naithani
 - [gmx-users] Specific question regarding SPC water model
 
tnorgd
 - [gmx-users] Specific question regarding SPC water model
 
Justin Lemkul
 - [gmx-users] Re: Specific question regarding SPC water model
 
Someone Else
 - [gmx-users] Re: Specific question regarding SPC water model
 
Justin Lemkul
 - [gmx-users] stay at some temperature during annealing
 
mu xiaojia
 - [gmx-users] stay at some temperature during annealing
 
Justin Lemkul
 - [gmx-users] stay at some temperature during annealing
 
Dr. Vitaly Chaban
 - [gmx-users] stay at some temperature during annealing
 
mu xiaojia
 - [gmx-users] Steepest Descents in vacuo
 
maggin
 - [gmx-users] Steepest Descents in vacuo
 
Justin Lemkul
 - [gmx-users] Re: Steepest Descents in vacuo
 
maggin
 - [gmx-users] Re: Steepest Descents in vacuo
 
Mark Abraham
 - [gmx-users] Re: Steepest Descents in vacuo
 
maggin
 - [gmx-users] Re: Steepest Descents in vacuo
 
Justin Lemkul
 - [gmx-users] Steepest LINCS WARNING
 
maggin
 - [gmx-users] Re: Steepest LINCS WARNING
 
maggin
 - [gmx-users] Re: Steepest LINCS WARNING
 
Mark Abraham
 - [gmx-users] still dealing with GFP-like chromophore with LINCS	warnings
 
Anna Marabotti
 - [gmx-users] still dealing with GFP-like chromophore with LINCS	warnings
 
Baptiste Demoulin
 - [gmx-users] structure alignement :g_rmsdist
 
Nawel Mele
 - [gmx-users] structure alignement :g_rmsdist
 
Mark Abraham
 - [gmx-users] structure alignement :g_rmsdist
 
Nawel Mele
 - [gmx-users] structure alignement :g_rmsdist
 
Tsjerk Wassenaar
 - [gmx-users] structure alignement :g_rmsdist
 
Nawel Mele
 - [gmx-users] structure alignement :g_rmsdist
 
Tsjerk Wassenaar
 - [gmx-users] structure alignement :g_rmsdist
 
Nawel Mele
 - [gmx-users] System broken after energy minimization
 
Kieu Thu Nguyen
 - [gmx-users] System broken after energy minimization
 
Justin Lemkul
 - [gmx-users] System broken after energy minimization
 
Tsjerk Wassenaar
 - [gmx-users] System does not heat up to 300K.
 
Marc Hömberger
 - [gmx-users] System does not heat up to 300K.
 
Justin Lemkul
 - [gmx-users] System does not heat up to 300K.
 
Dr. Vitaly Chaban
 - [gmx-users] System does not heat up to 300K.
 
Marc Hoemberger
 - [gmx-users] System equilibrium problems
 
Parker de Waal
 - [gmx-users] System equilibrium problems
 
Mark Abraham
 - [gmx-users] System equilibrium problems
 
Parker de Waal
 - [gmx-users] Re: System equilibrium problems
 
maggin
 - [gmx-users] Re: System equilibrium problems
 
Parker de Waal
 - [gmx-users] Re: System equilibrium problems
 
Justin Lemkul
 - [gmx-users] Re: System equilibrium problems
 
Parker de Waal
 - [gmx-users] Re: System equilibrium problems
 
Justin Lemkul
 - [gmx-users] System expansion
 
Oliver Schillinger
 - [gmx-users] System expansion
 
Dr. Vitaly Chaban
 - [gmx-users] Tabulated angles - how to use?
 
Steven Neumann
 - [gmx-users] Tabulated angles - how to use?
 
Mark Abraham
 - [gmx-users] Tabulated Potentials
 
O'Neill, David
 - [gmx-users] Re: Tabulated Potentials
 
Andrish Reddy
 - [gmx-users] Tempereture coupling and heat flux on each part
 
Hari Pandey
 - [gmx-users] Test Particle Insertion
 
Phan, Anh T.
 - [gmx-users] Test Particle Insertion
 
Naga Rajesh Tummala
 - [gmx-users] Test Particle Insertion
 
João M. Damas
 - [gmx-users] RE: Test Particle Insertion 
 
Phan, Anh T.
 - [gmx-users] Thought you'd find this interesting
 
Anil Mhashal
 - [gmx-users] Thought you'd find this interesting
 
Oliver Schillinger
 - [gmx-users] Thought you'd find this interesting
 
Anil Mhashal
 - [gmx-users] to print parameters used from force field
 
gromacs query
 - [gmx-users] to print parameters used from force field
 
Mark Abraham
 - [gmx-users] to print parameters used from force field
 
gromacs query
 - AW: [gmx-users] to print parameters used from force field
 
Florian Dommert
 - [gmx-users] to print parameters used from force field
 
gromacs query
 - [gmx-users] to print parameters used from force field
 
Mark Abraham
 - [gmx-users] to print parameters used from force field
 
gromacs query
 - [gmx-users] to print parameters used from force field
 
Mark Abraham
 - [gmx-users] TPI Results differ in v4.5.7 and v4.6.1
 
Niels Müller
 - [gmx-users] TPI Results differ in v4.5.7 and v4.6.1
 
João M. Damas
 - [gmx-users] TPI Results differ in v4.5.7 and v4.6.1
 
Niels Müller
 - [gmx-users] TPI Results differ in v4.5.7 and v4.6.1
 
Szilárd Páll
 - [gmx-users] TPI Results differ in v4.5.7 and v4.6.1
 
João M. Damas
 - [gmx-users] Trying to get dcd files
 
chinnu657
 - [gmx-users] Trying to obtain dcd files
 
chinnu657
 - [gmx-users] Tutor directory in gromacs 4.6
 
colinbannister
 - [gmx-users] Tutor directory in gromacs 4.6
 
Chandan Choudhury
 - [gmx-users] Tutor directory in gromacs 4.6
 
Colin Bannister
 - [gmx-users] Tutor directory in gromacs 4.6
 
Justin Lemkul
 - [gmx-users] Re: umbrella sampling for two polymer interaction
 
gromacs query
 - [gmx-users] Re: umbrella sampling for two polymer interaction
 
Thomas Schlesier
 - [gmx-users] Umbrella Sampling Force component output
 
Kenny Bravo Rodriguez
 - [gmx-users] Umbrella Sampling Force component output
 
Erik Marklund
 - [gmx-users] Umbrella Sampling Force component output
 
Kenny Bravo Rodriguez
 - [gmx-users] Unable to download Gromacs source tar file
 
Bhamy Maithry Shenoy
 - [gmx-users] Unable to download Gromacs source tar file
 
Mark Abraham
 - [gmx-users] Unable to download Gromacs source tar file
 
Bhamy Maithry Shenoy
 - [gmx-users] Unable to download Gromacs source tar file
 
Mark Abraham
 - [gmx-users] Unable to download Gromacs source tar file
 
Chandan Choudhury
 - [gmx-users] Unable to download Gromacs source tar file
 
Mark Abraham
 - [gmx-users] Unable to download Gromacs source tar file
 
Mark Abraham
 - [gmx-users] Unable to download Gromacs source tar file
 
Mirco Wahab
 - [gmx-users] Unable to download Gromacs source tar file
 
Bhamy Maithry Shenoy
 - [gmx-users] Unable to download Gromacs source tar file
 
Bhamy Maithry Shenoy
 - [gmx-users] Re: Unable to download Gromacs source tar file
 
Christoph Junghans
 - [gmx-users] Unable to download Gromacs source tar file
 
Mirco Wahab
 - [gmx-users] Re: Unable to download Gromacs source tar file
 
Bhamy Maithry Shenoy
 - [gmx-users] unit conversion
 
Hyunjin Kim
 - [gmx-users] Unknown bond_atomtype C2
 
Nilesh Dhumal
 - [gmx-users] User-define non bonded table
 
Steven Neumann
 - [gmx-users] User-define non bonded table
 
Mohan maruthi sena
 - [gmx-users] User-define non bonded table
 
Steven Neumann
 - [gmx-users] User-define non bonded table
 
Justin Lemkul
 - [gmx-users] User-define non bonded table
 
Steven Neumann
 - [gmx-users] User-define non bonded table
 
Justin Lemkul
 - [gmx-users] User-define non bonded table
 
Steven Neumann
 - [gmx-users] User-define non bonded table
 
Steven Neumann
 - [gmx-users] User-define non bonded table
 
Justin Lemkul
 - [gmx-users] using previous window restart file
 
gromacs query
 - [gmx-users] Re: using previous window restart file
 
gromacs query
 - [gmx-users] Re: using previous window restart file
 
Justin Lemkul
 - [gmx-users] velocity-verlet giving nans
 
Sikandar Mashayak
 - [gmx-users] velocity-verlet giving nans
 
Mark Abraham
 - [gmx-users] Virtual sites parameters
 
Bastien Loubet
 - [gmx-users] Virtual sites parameters
 
Justin Lemkul
 - [gmx-users] Viscosity
 
Marcelo Vanean
 - [gmx-users] Viscosity
 
David van der Spoel
 - [gmx-users] viscosity
 
David van der Spoel
 - [gmx-users] viscosity
 
Marcelo Vanean
 - [gmx-users] viscosity
 
David van der Spoel
 - [gmx-users] Visualize Protein ligand complex
 
Sainitin Donakonda
 - [gmx-users] Visualize Protein ligand complex
 
Thales Kronenberger
 - [gmx-users] Visualize Protein ligand complex
 
Tsjerk Wassenaar
 - [gmx-users] Vritual Sites and simulation time-step
 
Mark Abraham
 - [gmx-users] Vritual Sites and simulation time-step
 
Mark Abraham
 - [gmx-users] Vritual Sites and simulation time-step
 
Mark Abraham
 - [gmx-users] Vritual Sites and simulation time-step
 
James Starlight
 - [gmx-users] Vritual Sites and simulation time-step
 
James Starlight
 - [gmx-users] Vritual Sites and simulation time-step
 
Mark Abraham
 - [gmx-users] Vritual Sites and simulation time-step
 
James Starlight
 - [gmx-users] Vritual Sites and simulation time-step
 
Erik Marklund
 - [gmx-users] water position restraints
 
Shima Arasteh
 - [gmx-users] water position restraints
 
Mark Abraham
 - [gmx-users] water position restraints
 
Shima Arasteh
 - [gmx-users] water position restraints
 
Justin Lemkul
 - [gmx-users] why mass and charge is zero?
 
Albert
 - [gmx-users] why mass and charge is zero?
 
David van der Spoel
 - [gmx-users] why mass and charge is zero?
 
Albert
 - [gmx-users] xx of the xxxx bonded interactions couldn't be	calculated
 
Badamkhatan
 - [gmx-users] xx of the xxxx bonded interactions couldn't be	calculated
 
Justin Lemkul
 - [gmx-users] xx of the xxxx bonded interactions couldn't be	calculated
 
David van der Spoel
 - [gmx-users] XYZ Cordinates of a subsset of atoms
 
rankinb
 - [gmx-users] XYZ Cordinates of a subsset of atoms
 
Mark Abraham
 - [gmx-users] Re: Your Response to my GROMACS question
 
Justin Lemkul
 - 转发:[gmx-users] gromacs on GPU
 
sunyeping at aliyun.com
 - Re: 转发:[gmx-users] gromacs on GPU
 
Mark Abraham
    
 
    
      Last message date: 
       Sun Jun 30 18:11:13 CEST 2013
    Archived on: Thu Nov 14 12:14:28 CET 2013
    
   
     
     
     This archive was generated by
     Pipermail 0.09 (Mailman edition).