[gmx-users] GPU problem

[Chandan Choudhury]

Hi Albert,

I think using -nt flag (-nt=16) with mdrun would solve your problem.

Chandan


--
Chandan kumar Choudhury
NCL, Pune
INDIA


On Tue, Jun 4, 2013 at 12:56 PM, Albert <mailmd2011 at gmail.com> wrote:

> Dear:
>
>  I've got four GPU in one workstation. I am trying to run two GPU job with
> command:
>
> mdrun -s md.tpr -gpu_id 01
> mdrun -s md.tpr -gpu_id 23
>
> there are 32 CPU in this workstation. I found that each job trying to use
> the whole CPU, and there are 64 sub job when these two GPU mdrun submitted.
>  Moreover, one of the job stopped after short of running, probably because
> of the CPU issue.
>
> I am just wondering, how can we distribute CPU when we run two GPU job in
> a single workstation?
>
> thank you very much
>
> best
> Albert
> --
> gmx-users mailing list    gmx-users at gromacs.org
> http://lists.gromacs.org/**mailman/listinfo/gmx-users<http://lists.gromacs.org/mailman/listinfo/gmx-users>
> * Please search the archive at http://www.gromacs.org/**
> Support/Mailing_Lists/Search<http://www.gromacs.org/Support/Mailing_Lists/Search>before posting!
> * Please don't post (un)subscribe requests to the list. Use the www
> interface or send it to gmx-users-request at gromacs.org.
> * Can't post? Read http://www.gromacs.org/**Support/Mailing_Lists<http://www.gromacs.org/Support/Mailing_Lists>
>