[gmx-users] diherdal psi vs angle teta plot

Justin Lemkul jalemkul at vt.edu
Wed Jun 5 20:15:22 CEST 2013

On 6/5/13 2:13 PM, Steven Neumann wrote:
> Dear Gmx Users,
> I wish to obtain the 2D scatter plot in which I will have my protein
> Ca-Ca-Ca tetta angle and the psi angle N(i)-CA(i)-C(k)-N(i+1) of the
> central residue?
> Would you please help?

Use g_angle to extract whatever quantities you want, then use your favorite 
scripting language (awk works nicely) to extract the columns and plot them 
against one another.



Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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