[gmx-users] Re: cg Fatal error--DD cell
maggin
maggin.chen at gmail.com
Fri Jun 7 03:27:29 CEST 2013
the information on .log as follows:
Initializing Domain Decomposition on 2 nodes
Dynamic load balancing: no
Will sort the charge groups at every domain (re)decomposition
Initial maximum inter charge-group distances:
two-body bonded interactions: 0.598 nm, LJ-14, atoms 942 950
multi-body bonded interactions: 0.598 nm, Proper Dih., atoms 942 950
Minimum cell size due to bonded interactions: 0.657 nm
User supplied maximum distance required for P-LINCS: 0.876 nm
Using 0 separate PME nodes
Optimizing the DD grid for 2 cells with a minimum initial size of 0.876 nm
The maximum allowed number of cells is: X 7 Y 7 Z 7
Domain decomposition grid 2 x 1 x 1, separate PME nodes 0
PME domain decomposition: 2 x 1 x 1
Domain decomposition nodeid 0, coordinates 0 0 0
Table routines are used for coulomb: TRUE
Table routines are used for vdw: FALSE
Will do PME sum in reciprocal space.
Anybody could tell me how to fix this problem!
Thank you very much!
maggin
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