[gmx-users] segemntation fault after run do_dssp

Nur Syafiqah Abdul Ghani pqah123 at gmail.com
Fri Jun 7 08:42:09 CEST 2013

Hi All,

I already done the MD production so I want to analyse the helical
structure of my protein by using do_dssp program.The command is like
below :

 do_dssp -s md_water50.tpr -f md_water50.trr -n mainchain.ndx -sc
dssp_scount.xvg -a dssp_area.xvg -ta dssp_totarea.xvg -aa

but after i run the command the result show like :

Reading file md_water50.tpr, VERSION 4.5.5 (double precision)
Reading file md_water50.tpr, VERSION 4.5.5 (double precision)
Segmentation fault (core dumped)

I already install the dssp program from
ftp://ftp.cmbi.ru.nl/pub/software/dssp/ and follow the instruction as
shown there but it seems that nothing happened..I already gedit the
.bashrc for dssp.

Best Regards,

Nur Syafiqah Abdul Ghani,
Theoretical and Computational Chemistry Laboratory,
Department of Chemistry,
Faculty of Science,
Universiti Putra Malaysia,
43400 Serdang,
alternative email : syafiqahabdulghani at gmail.com @ GS33669 at mutiara.upm.edu.my

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