[gmx-users] sequentially fitting each frame of one trajectory to each frame of another trajectory

[Thomas Evangelidis]

Dear GROMACS list,

I used minVar to remove global rotations and translations from a
trajectory, but due to memory issues I used a replica with only the
backbone of the protein. Now I want to fit each frame of the original
protein trajectory to the respective frame of the processed backbone
trajectory. Is there any GMX tool that can do that?

thanks,
Thomas



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Thomas Evangelidis

PhD student
University of Athens
Faculty of Pharmacy
Department of Pharmaceutical Chemistry
Panepistimioupoli-Zografou
157 71 Athens
GREECE

email: tevang at pharm.uoa.gr

          tevang3 at gmail.com


website: https://sites.google.com/site/thomasevangelidishomepage/