[gmx-users] gromos force field in PRODRG server

[shahab shariati]

Dear gromacs users


I want to do MD simualation for a protein-ligand system.

For ligand, I use PRODRG server. I know that this server generate a *.itp
file for ligand based on gromos force field.

There are 5 versions for gromos force field (GROMOS96 43a1, GROMOS96 43a2,
GROMOS96 45a3, GROMOS96 53a5, GROMOS96 53a6)
in gromacs package.


what version of mentioned versions of gromos force field is used in PRODRG
server to generate a *.itp file for ligand?

In fact, I want to know what version of gromos force fields I should use
for protein.


Any help will highly appreciated.