[gmx-users] How to check if one protein broke into fragments during MD?

[maggin]

Hi, all

1dx0.pdb during MD step at 19532ps are broken into 8 fragments, as VMD show
about  bovin19532.gro

  <http://gromacs.5086.x6.nabble.com/file/n5009221/aa.jpg> 

as picture shows that  at the bottom the number of protein is 8

while when I use VMD to see md_0_1.gro the last structure of MD finished 

<http://gromacs.5086.x6.nabble.com/file/n5009221/bb.jpg> 

at the bottom the number of protein is 1

So, it seems from last structure it can not tell if is this protein broken.

Is there anyway to check if protein  is broken during MD?

Thank you very much!

maggin



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