[gmx-users] Can't read 1048576 bytes of 'pullx500.xvg' to compute checksum.

[Steven Neumann]

Thank you for this.
I run this simulation from scratch, will try it next time thought.

Steven


On Tue, Jun 25, 2013 at 11:26 AM, lloyd riggs <lloyd.riggs at gmx.ch> wrote:

> I had this some time ago and cant remember everything, other than its a
> format problem.  My end solution that worked was to simply cut and past in
> columns the entire pullf into one .xvg, say in gnumeric retaining an
> origional header, than read it into xmgrace, and then just write it out
> from xmgrace again to file xxx.xvg then it worked.  I still could not find
> out why, and spent hours making sure everthing had same space numbers, or
> tab spacing, or etc...the only thing I noted was with xmgrace theirs a & or
> something at the end, but putting even this in manually to the files did
> not work...dont know if that helps...
>
> Stephan
>
> *Gesendet:* Dienstag, 25. Juni 2013 um 10:48 Uhr
> *Von:* "Steven Neumann" <s.neumann08 at gmail.com>
> *An:* "Discussion list for GROMACS users" <gmx-users at gromacs.org>
> *Betreff:* [gmx-users] Can't read 1048576 bytes of 'pullx500.xvg' to
> compute checksum.
> Dear Users,
>
> I know this error has been discussed many times but the outcome from
> mdrun -pf and -px stopped at the same time which is 39470 ps. Somehow
> gromacs caanot read pullx500.xvg but no clue why. I tried dos2gmx and still
> the same error occur.
>
> As I do not care about pullx500.xvg I run grompp again to change the tpr
> file and set pull_nstxout = 0 then run from the checkpoint but then the
> error occurs that 4 out of 5 files to append are only present.
>
> Can you advise please?
>
> Steven
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