[gmx-users] setting the gromacs 4.6.1 path

Mark Abraham mark.j.abraham at gmail.com
Wed Mar 13 09:20:03 CET 2013


On Wed, Mar 13, 2013 at 8:33 AM, 라지브간디 <rajiv at kaist.ac.kr> wrote:

> Dear Mark,
>
>
> My terminal version is Linux masters 3.3.4-5.fc17.x86_64 as I believe its
> not that much old version.
>

That's recent enough. Whatever shell you are running is set up strangely,
however. See my suggestions last time.

I also tried to use the source command like (source
> /usr/local/gromacs/bin/GMXRC.bash) but still i getting the same problem.
>

Impossible. GMXRC.bash doesn't have goto in it.

Mark


>
>
>
>
>  dear gmx.
> >
> >
> > i am having a problem of setting the path as mentioned in gromacs manual
> > 4.6.1 version.
> >
> >
> > I used
> >
> >
> > source /usr/local/gromacs/bin/GMXRC
> >
> >
> > bash: goto: command not found..
> >
>
> What is your terminal? What is its version? You might need to update that
> if it's truly ancient. Otherwise, your bash shell is probably erroneously
> setting the variable "shell", which it should not do. This foils the
> GROMACS detection of which shell you are running. If you can't fix that,
> you should source whichever of GMXRC.csh, GMXRC.bash or GMXRC.ksh is
> applicable.
>
> when i use
> >
> >
> > echo "source /usr/local/gromacs/bin/GMXRC" >> ~/.bash_profile
> >
> >
> > it work on that terminal only. cant access the gromacs from other
> > terminal. Could you tell me what is the problem of ? Thanks
> >
>
> Source only ever works on the shell in which it is run. Setting up your
> profile to source automatically solves the problem for each new shell, and
> not any existing ones.
>
> Mark
>
> --
> gmx-users mailing list    gmx-users at gromacs.org
> http://lists.gromacs.org/mailman/listinfo/gmx-users
> * Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
> * Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>



More information about the gromacs.org_gmx-users mailing list