[gmx-users] a plot technique question

Mark Abraham mark.j.abraham at gmail.com
Thu Mar 21 11:10:00 CET 2013


That's probably a free-energy plot, made by some tool that works like
g_sham. Every structure can be projected onto the coordinates of the
underlying 2D histogram.

Mark

On Thu, Mar 21, 2013 at 10:42 AM, Albert <mailmd2011 at gmail.com> wrote:

> Hello:
>
>  I've finished a replica exchange simulation and I would  like to make a
> plot like:
>
>
> http://ars.els-cdn.com/**content/image/1-s2.0-**S1093326303002006-gr4.jpg<http://ars.els-cdn.com/content/image/1-s2.0-S1093326303002006-gr4.jpg>
>
> I am just wondering how can associate your energy (the red/white color)
> with 2D XY plot in the above figure?
>
> thank you very much
> best
> Albert
>
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