[gmx-users] how can we obtain replicated trajectory?

[Albert]

Hello:

  I've finished a replica exchange simulation with 72 replica 
(300K-580K) under explicit solvent model. It generate 72 trajectory and 
the replica since to "cross" well with neighboring temperature. Here is 
the figure:


http://dl.dropbox.com/u/56271062/REMD.png

  I am just wondering how can we generate and visualize the system at 
300 K  with that at 400-500 K? There is a ligand in my system, and it is 
expected to escape binding pocket with large loop movement....

thank you very much

best
Albert