[gmx-users] Error in REMD

Mark Abraham mark.j.abraham at gmail.com
Fri Mar 22 15:39:09 CET 2013


This would normally mean you are somehow calling code from one GROMACS
version with code from another. Some kind of dynamic library loading mishap?

Mark

On Fri, Mar 22, 2013 at 10:41 AM, Nikunj Maheshwari <
nixcrazyforher at gmail.com> wrote:

> Dear all...
>
> We ran REMD simulations for 36 replicas. We got an error which stopped the
> whole simulation.
>
> "
> Reading file md21.tpr, VERSION 4.5.5 (single precision)
> Loaded with Money
>
> Reading file md24.tpr, VERSION 4.5.5 (single precision)
> Loaded with Money
>
>
> -------------------------------------------------------
> Program mdrun_mpi, VERSION 4.5.5
> Source code file: symtab.c, line: 108
>
> Fatal error:
> symtab get_symtab_handle 1031126655 not found
> For more information and tips for troubleshooting, please check the GROMACS
> website at http://www.gromacs.org/Documentation/Errors
> -------------------------------------------------------
>
> "The World is a Friendly Place" (Magnapop)
>
> Error on node 35, will try to stop all the nodes
> Halting parallel program mdrun_mpi on CPU 35 out of 36
>
> gcq#103: "The World is a Friendly Place" (Magnapop)
>
> MPI: Global rank 35 is aborting with error code -1.
> "
>
> Can someone help us in knowing what the error means and how to it can be
> rectified?
>
> Thanks....
> --
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