[gmx-users] scaling factor for rna/dna

[Vishwambhar Bhandare]

dear gromacs users,
I am doing LIE calculation in gromacs for RNA molecules,
What scaling factor (alpha and beta) should i use for calculation?
Is that default values for protein ligand will work'?
how we can get these alpha and beta scaling factors for nucleic acid?
thanks in advance..


Thanks and Regards,
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Vishwambhar
Centre for Bioinformatics
Pondicherry University
Pondicherry
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Note: Strictly confidential to Vishwayogi