[gmx-users] scaling factor for rna/dna

[Erik Marklund]

Hi,

I suggest contacting people in Johan Åqvist's lab. I'm sure they know exactly what pitfalls there may be with regards to the choice of LIE parameters and what has been done for different types of molecules.

Erik

On 26 Mar 2013, at 02:42, Vishwambhar Bhandare <vishwayogi at gmail.com> wrote:

> dear gromacs users,
> I am doing LIE calculation in gromacs for RNA molecules,
> What scaling factor (alpha and beta) should i use for calculation?
> Is that default values for protein ligand will work'?
> how we can get these alpha and beta scaling factors for nucleic acid?
> thanks in advance..
> 
> 
> Thanks and Regards,
> --------------------------
> Vishwambhar
> Centre for Bioinformatics
> Pondicherry University
> Pondicherry
> --------------------------
> 
> Note: Strictly confidential to Vishwayogi
> -- 
> gmx-users mailing list    gmx-users at gromacs.org
> http://lists.gromacs.org/mailman/listinfo/gmx-users
> * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
> * Please don't post (un)subscribe requests to the list. Use the 
> www interface or send it to gmx-users-request at gromacs.org.
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists