[gmx-users] PCA_RMS fluctuation per residue?

라지브간디 rajiv at kaist.ac.kr
Wed May 8 07:20:33 CEST 2013

Dear gmx users,

I've done covariance matrix for backbone of protein using g_covar command.

Also, can able to plot all projections through g_anaeig. 

However, I could only able to do -rmsf: plot the RMS fluctuation per atom of eigenvectors BUT i wants to do them per residue? How can i achieve this?

In manual it shows -filt: command filter the trajectory to show only the motion along eigenvectors. How i do visualize this kind of motions? 


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