[gmx-users] PCA_RMS fluctuation per residue?

[라지브간디]

Dear gmx users,


I've done covariance matrix for backbone of protein using g_covar command.


Also, can able to plot all projections through g_anaeig. 


However, I could only able to do -rmsf: plot the RMS fluctuation per atom of eigenvectors BUT i wants to do them per residue? How can i achieve this?


In manual it shows -filt: command filter the trajectory to show only the motion along eigenvectors. How i do visualize this kind of motions? 






Rajiv