[gmx-users] Re: A problem with do_dssp command

Justin Lemkul jalemkul at vt.edu
Thu May 9 00:25:17 CEST 2013

On 5/8/13 6:24 PM, zugunder wrote:
> OK, thank you, now it is clear.
> So, that's what I've done so far:
> 1. Got a dsspold binary for Linux (unfortunately, 32bit only).
> 2. Renamed it into dssp, moved to /usr/local/bin and made it executable with
> chmod a+x
> 3. Because of dsspold being 32bit (giving an error on a wrong ELF
> descriptor) I installed 32-bit glibc library.
> 4. Ran a command, got an xpm output and converted it into .eps with g_xpm2ps
> 5. The both images are compressed vertically - i.e. Y axis is very short, so
> it is not possible to resolve any changes in structure at all.
> So I have a question to #5 - did I need to specify any additional
> parameters?

You can adjust dimensions using an .m2p file.  The online manual has an example.



Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


More information about the gromacs.org_gmx-users mailing list