[gmx-users] Re: A problem with do_dssp command

Justin Lemkul jalemkul at vt.edu
Thu May 9 01:38:08 CEST 2013

On 5/8/13 7:18 PM, zugunder wrote:
> May I ask you to share the content of your m2p?

The size of the matrix elements is subjective; it depends on what dimensions of 
the matrix you want.  My usual settings are xbox = 0.05, ybox = 2.0, but that's 
for my systems, which are relatively small along y.

> The problem here is that using defaults (no -di) I at least can see some eps
> image via evince for example, but when I use m2p consisting of these 2
> lines:
> xbox                     = 0.2          ; x-size of a matrix element
> ybox                     = 20.0         ; y-size of a matrix element
> I don't see any image, moreover, evince hangs up.
> However, as it turned out, .xpm is easily viewable and editable with Gimp...
> that's probably even more convenient.

Could be.  As I recall, you don't get all the legend information if you open the 
.xpm directly, though.



Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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