[gmx-users] About CNT wrapped by Cyclic peptide

[Mark Abraham]

On Mon, May 20, 2013 at 12:25 PM, vidhya sankar <scvsankar_agr at yahoo.com>wrote:

> Dear Mark and Justin  Thank you for yours previous  Replies;
> You Mailed ME that My NVT and NPT  equilibration is seems to be  crashed .
> But  Actually My NVT Equlibration and NPT Equlibation was Sucessfull It
>  gives Nice output  without Lincs  warning ,  System exploding
>

Shrug. You reported a simulation failing with LINCS issues...

But My Question Is there is Any Relation between System size and
> Equilibration Time
>

There can be. Depends on the system and what you want to observe.

Mark


> Because My I ran 2 ns equilibration (fro Both NPT & NVT ) So I want to
> Increase the time step to atleast 10 ns
>
> Thanks In Advance
>
> --
> gmx-users mailing list    gmx-users at gromacs.org
> http://lists.gromacs.org/mailman/listinfo/gmx-users
> * Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
> * Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>