[gmx-users] choice of forcefield

[David van der Spoel]

On 2013-05-28 14:39, massimo sandal wrote:
> What other people do?

Read literature. Gromacs allows you to choose many. If you need detailed 
results use an atomistic force field.
>
>
> 2013/5/28 Dr. Vitaly Chaban <vvchaban at gmail.com>
>
>> In my mind, MARTINI is a decent option to build your particular topology
>> upon.
>>
>> Dr. Vitaly Chaban
>>
>>
>> On Tue, May 28, 2013 at 8:22 AM, Revthi Sanker <revthi.sanker at yahoo.com
>>> wrote:
>>
>>> Dear all,
>>> I am a beginner to performing simulations and my system consists of
>>> protein+ cholesteryl ester +phospholipid and drug. Papers involving
>> lipids
>>> are in general united atom, while those involving drug-protein systems
>> are
>>> all-atom mostly. Kindly suggest me which of these, all-atom or united
>> atom
>>> should I be using for my system.
>>>
>>> Thanks for your help in advance
>>> Yours sincerely,
>>> Revathi
>>> M.S. Research Scholar
>>> Indian Institute of Technology,Madras
>>> India
>>> --
>>> gmx-users mailing list    gmx-users at gromacs.org
>>> http://lists.gromacs.org/mailman/listinfo/gmx-users
>>> * Please search the archive at
>>> http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
>>> * Please don't post (un)subscribe requests to the list. Use the
>>> www interface or send it to gmx-users-request at gromacs.org.
>>> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>>>
>> --
>> gmx-users mailing list    gmx-users at gromacs.org
>> http://lists.gromacs.org/mailman/listinfo/gmx-users
>> * Please search the archive at
>> http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
>> * Please don't post (un)subscribe requests to the list. Use the
>> www interface or send it to gmx-users-request at gromacs.org.
>> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>>


-- 
David van der Spoel, Ph.D., Professor of Biology
Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone:	+46184714205.
spoel at xray.bmc.uu.se    http://folding.bmc.uu.se