[gmx-users] g_covar -ascii

Payman Pirzadeh ppirzade at ucalgary.ca
Wed May 29 18:07:14 CEST 2013

I am interested in dynamical analysis of my protein. In the manual, it says
-ascii generates a file that includes the whole covariance matrix, and -xpma
writes the atomic covariance matrix per pair of atoms. I was wondering if
there is a way to have this atomic covariaces in the .dat file with -ascii
switch. Otherwise, is there a script in gromacs that converts the xpm to an
ascii file? In addition, is the -xpma output normalized?
Thanks for your help.


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