[gmx-users] Installing Extended Genbox

[Justin Lemkul]

On 10/1/13 10:58 AM, Tegar Nurwahyu Wijaya wrote:
> Hi Mark,
>
> Thank you for your reply. Actually I am not trying to add it to the
> repository.
>
> I have gromacs 4.6 installed in my computer. When I was trying using
> genbox, an error occurred caused by memory lacking. After searched this
> mailing list, I got that extended genbox code that can fix my problem. But
> I don't know how to put that code into my installed gromacs 4.6. Do you or
> anybody know how to do that?
>

You need to clone the git repository (i.e. the development code) and then apply 
the patch with the instructions at the link Mark sent you.  Further up on the 
page is how you get started in terms of obtaining the development code from git. 
  It is unwise to try to apply a patch from the master branch on version 4.6; I 
doubt it would even work.

-Justin

> Regards,
> Tegar
>
>
> On Tue, Oct 1, 2013 at 10:12 AM, Mark Abraham <mark.j.abraham at gmail.com>wrote:
>
>> I would generally not try to add it to an existing source repository.
>> Instead, follow one of the suggestions in
>>
>> http://www.gromacs.org/Developer_Zone/Git/Gerrit#How_do_I_get_a_copy_of_my_commit_for_which_someone_else_has_uploaded_a_patch.3f
>> to
>> check out that version.
>>
>> Mark
>>
>>
>> On Tue, Oct 1, 2013 at 6:24 AM, Tegar Nurwahyu Wijaya <
>> tnurwahyuwijaya at gmail.com> wrote:
>>
>>> Dear all,
>>>
>>> I want to install Extended Genbox from gerrit.
>>>
>>> https://gerrit.gromacs.org/#/c/1175/
>>>
>>> How can I put this code into my existing gromacs installation?
>>>
>>> Thanks.
>>>
>>> Regards,
>>> Tegar
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-- 
==================================================

Justin A. Lemkul, Ph.D.
Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 601
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441

==================================================