[gmx-users] Installing Extended Genbox

[Mark Abraham]

Since that patch is already merged, Tegar can just check out the (default)
master branch - see http://www.gromacs.org/Developer_Zone/Git. The CMake
build works the same way. I would suggest just using
<your-build-directory>/bin/genbox once you have built it, i.e. do not go to
the trouble of installing the development version. You should prefer to use
the normal versions of all the tools unless you want to live on the edge!

Mark


On Tue, Oct 1, 2013 at 5:01 PM, Justin Lemkul <jalemkul at vt.edu> wrote:

>
>
> On 10/1/13 10:58 AM, Tegar Nurwahyu Wijaya wrote:
>
>> Hi Mark,
>>
>> Thank you for your reply. Actually I am not trying to add it to the
>> repository.
>>
>> I have gromacs 4.6 installed in my computer. When I was trying using
>> genbox, an error occurred caused by memory lacking. After searched this
>> mailing list, I got that extended genbox code that can fix my problem. But
>> I don't know how to put that code into my installed gromacs 4.6. Do you or
>> anybody know how to do that?
>>
>>
> You need to clone the git repository (i.e. the development code) and then
> apply the patch with the instructions at the link Mark sent you.  Further
> up on the page is how you get started in terms of obtaining the development
> code from git.  It is unwise to try to apply a patch from the master branch
> on version 4.6; I doubt it would even work.
>
> -Justin
>
>
>  Regards,
>> Tegar
>>
>>
>> On Tue, Oct 1, 2013 at 10:12 AM, Mark Abraham <mark.j.abraham at gmail.com>*
>> *wrote:
>>
>>  I would generally not try to add it to an existing source repository.
>>> Instead, follow one of the suggestions in
>>>
>>> http://www.gromacs.org/**Developer_Zone/Git/Gerrit#How_**
>>> do_I_get_a_copy_of_my_commit_**for_which_someone_else_has_**
>>> uploaded_a_patch.3f<http://www.gromacs.org/Developer_Zone/Git/Gerrit#How_do_I_get_a_copy_of_my_commit_for_which_someone_else_has_uploaded_a_patch.3f>
>>> to
>>> check out that version.
>>>
>>> Mark
>>>
>>>
>>> On Tue, Oct 1, 2013 at 6:24 AM, Tegar Nurwahyu Wijaya <
>>> tnurwahyuwijaya at gmail.com> wrote:
>>>
>>>  Dear all,
>>>>
>>>> I want to install Extended Genbox from gerrit.
>>>>
>>>> https://gerrit.gromacs.org/#/**c/1175/<https://gerrit.gromacs.org/#/c/1175/>
>>>>
>>>> How can I put this code into my existing gromacs installation?
>>>>
>>>> Thanks.
>>>>
>>>> Regards,
>>>> Tegar
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> --
> ==============================**====================
>
> Justin A. Lemkul, Ph.D.
> Postdoctoral Fellow
>
> Department of Pharmaceutical Sciences
> School of Pharmacy
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> University of Maryland, Baltimore
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>
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