[gmx-users] NMR restrained MD

[Rama Krishna Koppisetti]

Hi Justin,

If you are willing to see my complex pdb file or complex .gro file  and
topology files, I'll send you for the reference.




Thanks
Rama



On Sat, Sep 7, 2013 at 5:42 PM, Justin Lemkul <jalemkul at vt.edu> wrote:

>
>
> On 9/7/13 6:40 PM, Rama Krishna Koppisetti wrote:
>
>> Hi Justin,
>>
>> I use similar procedure as you mentioned in the tutorial to generate my
>> topologies for protein and bilayer. there is no .rtp file for lipid. Is
>> there any reference to include lipid molecule in aminoacid.rtp file.
>>
>>
> Read the manual and look at existing examples.  The .rtp format is very
> similar to the standard topology (.top/.itp) format, probably even a bit
> more straightforward.
>
>
> -Justin
>
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