[gmx-users] visualize gromacs trajectory in VMD

[pravin]

Hi,

 This happens due to pbc. You can use trajorder to get right structure.

Thanks.


On Tue, Apr 1, 2014 at 9:19 PM, sunyeping [via GROMACS] <
ml-node+s5086n5015551h95 at n6.nabble.com> wrote:

> Dear all,
> I am trying to visualize gromacs trajectory in VMD. when I load my .gro
> file, the GUI window of VMD show a structure that seems to be correct.
> However, when I load .xtc or .trr file, the strucute shown is seriously
> deformed. Most bonds become very long and the structures looks very
> strange. Could anyone tell me how to show the trajectory correctly? Thanks.
> Yeping Sun
> Institute of Microbiology, Chinese Academy of Sciences
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-- 
PRAVEEN KUMAR
Research scholar
INDIAN INSTITUTE OF SCIENCE
EDUCATION AND RESEARCH PUNE


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