[gmx-users] g_chi-like analysis for nucleic acid residues

sbowerma sbowerma at hawk.iit.edu
Mon Apr 14 23:35:53 CEST 2014


Hi Justin,

I tunnel-visioned and completely forgot about the mk_angndx tool.  I had
written a similar task for use with ptraj.  I should have mentioned that I
am working with .dcd's produced from NAMD with AMBER ff12SB forcefield and
parameters, but that's just a matter of getting pdb2gmx to play nicely with
my input to convert to .tpr for mk_angndx.  Thanks again!

Sam

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