[gmx-users] Gromacs help

[Tuhin Samanta]

Dear,
No thats not solve the problem................can you help me by giving me
proper command then it will be useful for me.......


Tuhin Samanta

On Mon, Aug 4, 2014 at 11:44 AM, Tsjerk Wassenaar <tsjerkw at gmail.com> wrote:

> Hi Tuhin Samanta,
>
> You have a space between the - and select. Always check for such typos.
>
> Cheers,
>
> Tsjerk
> On Aug 4, 2014 7:14 AM, "Tuhin Samanta" <samantatuhin1991 at gmail.com>
> wrote:
>
> > Dear,
> > Please tell me how i will use g_select command as i am simulating only
> > water molecules not any other reference molecule is there in my system
> but
> > i want to select a water molecule, and chose all water molecule within
> 0.4
> > nm around it, can you please tell me the proper command as i am getting
> > error with this command-
> >
> >  g_select -f npt_ir.gro -s npt_ir.tpr - select '"Nearby water" resname
> SOL
> > and within 0.4 ' -n indexg1.ndx -on indextrial.ndx
> > eroor message  is that :
> >
> > Invalid command line argument:
> > -
> > For more information and tips for troubleshooting, please check the
> GROMACS
> > website at http://www.gromacs.org/Documentation/Errors
> >
> >
> > Tuhin Samanta
> > --
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