[gmx-users] DSSP

Nikolaos Michelarakis nm884 at york.ac.uk
Mon Aug 25 02:01:11 CEST 2014


I am trying to do a secondary structure analysis to get the percentages of
each secondary structure in my protein. I know i can use do_dssp but
unfortunately DSSP is not installed on the cluster that i have been using
and i do not have the acess to install it. Any other ways to do it? or
would anyone be able to run it for me? I need it for 3 structures, for 3
different forcefields, 9 structures overall.

Thanks a lot,


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