[gmx-users] DSSP

[bipin singh]

You may download the relevant executables from the following links:

ftp://ftp.cmbi.ru.nl/pub/software/dssp/dssp-2.0.4-linux-amd64
ftp://ftp.cmbi.ru.nl/pub/software/dssp/dssp-2.0.4-linux-i386
ftp://ftp.cmbi.ru.nl/pub/software/dssp/dssp-2.0.4-win32.exe

before using the do_dssp module of Gromacs, export the path to the above
executable dssp as:


export dssp=/path/to/dssp/executable


then run the do_dssp as usual.





*------------------------Thanks and Regards,Bipin Singh*




On Mon, Aug 25, 2014 at 7:38 AM, Nikolaos Michelarakis <nm884 at york.ac.uk>
wrote:

> Hi,
>
> Thank you for your answer, could you please give me some more info on where
> to find them and how to use them for the whole trajectory?
>
> Cheers,
>
> Nicholas
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