[gmx-users] DSSP

[Nikolaos Michelarakis]

Yes, this is the command i am using:

do_dssp -s npt-nopr.tpr -f npt-nopr.trr -o fws-ss.xpm -ver 2

whether i include -ver 2 or not makes no difference, I still get the same
error.

Cheers,

Nicholas


On 25 August 2014 15:53, Mark Abraham <mark.j.abraham at gmail.com> wrote:

> Have you read and followed gmx do_dssp -h?
>
> Mark
>
>
> On Mon, Aug 25, 2014 at 2:21 PM, Nikolaos Michelarakis <nm884 at york.ac.uk>
> wrote:
>
> > Hello,
> >
> > Thank you all for your help! I got it working by downloading the
> > executables directly and setting the path but i do get the
> >
> > Program do_dssp, VERSION 5.0
> > Source code file:
> >
> >
> /home/jslatter/programs/gromacs/gromacs-5.0/src/gromacs/gmxana/gmx_do_dssp.c,
> > line: 670
> >
> > Fatal error:
> > Failed to execute command: Try specifying your dssp version with the -ver
> > option.
> >
> > error. No matter which version i specify, it persists, any ideas?
> >
> > Cheers,
> >
> > Nicholas
> > --
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