[gmx-users] Monitor distance between atoms

Eric Smoll ericsmoll at gmail.com
Wed Aug 27 20:01:54 CEST 2014

Hello Gromacs Users,

Is there a way to output the distance between and atom X and all atoms
within distance R of atom X along a trajectory?

I am paging through the manual but I can't seem to find anything like this.

I would settle for the coordinates of all atoms within a distance R of atom
X along the trajectory as well.


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